View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5313-Insertion-7 (Length: 530)
Name: NF5313-Insertion-7
Description: NF5313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5313-Insertion-7 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 515; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 515; E-Value: 0
Query Start/End: Original strand, 8 - 530
Target Start/End: Original strand, 44248282 - 44248804
Alignment:
| Q |
8 |
ctttgaacatgtaccacccttatcccaatcaccttcaaaatgagtaggtgagtatgttctcacaattacatcaattccattccctcttacaattttcttc |
107 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44248282 |
ctttgaacatgtaccacccttatcccaatcaccttcaaaatgagtaggtgagtatgttctcacaattacatcaattccattccctcttacaattttcttc |
44248381 |
T |
|
| Q |
108 |
tcaattatgctattaagggtagtccttaaagcctttctcattggaacataaaatccaatatcagtataattaaatttaaattcatgacatctaaaacaac |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44248382 |
tcaattatgctattaagggtagtccttaaagcctttctcattggaacataaaatccaatatcagtataattaaatttaaattcatgacatctaaaacaac |
44248481 |
T |
|
| Q |
208 |
ctataattgaaccaccctcatagtaaattgaaggaacatccgtaaaccaatgaccaaatgacaacacaatcaagtcaatttgatctatatccccagccca |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |
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| T |
44248482 |
ctataattgaaccaccctcatagtaaattgaaggaacatccgtaaaccaatgaccaaatgacaacacaatcgagtcaatttgatctatatccctagccca |
44248581 |
T |
|
| Q |
308 |
catctgatttacttgatctaaatatattgtattatattgtggaccatcctttattctttgatcacccttcacaagaaaaggtgaccaataggctgtcaag |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44248582 |
catctgatttacttgatctaaatatattgtattatattgtggaccatcctttattctttgatcacccttcacaagaaaaggtgaccaataggctgtcaag |
44248681 |
T |
|
| Q |
408 |
tttgcgttgtaagaaggaaagtaccaccttccatcagagcctatatggtggacacgtttagggcttgatacagtggataataagcaaataagggactcta |
507 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44248682 |
tttgcgttgtaagaaggaaagtaccaccttccatcagagcctatatggtggacacgtttagggcttgatacagtggataataagcaaataagggactcta |
44248781 |
T |
|
| Q |
508 |
tttggttatttgctaaagagtct |
530 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
44248782 |
tttggttatttgctaaagagtct |
44248804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 294; Significance: 1e-165; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 8 - 469
Target Start/End: Complemental strand, 15284278 - 15283817
Alignment:
| Q |
8 |
ctttgaacatgtaccacccttatcccaatcaccttcaaaatgagtaggtgagtatgttctcacaattacatcaattccattccctcttacaattttcttc |
107 |
Q |
| |
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||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| | || |||||| || |
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| T |
15284278 |
ctttgaacaagtaccacccttatcccaaccaccttcaaaatgagtaggtgagtatgttctcacaatcacatcaattttattccctttaaccattttcctc |
15284179 |
T |
|
| Q |
108 |
tcaattatgctattaagggtagtccttaaagcctttctcattggaacataaaatccaatatcagtataattaaatttaaattcatgacatctaaaacaac |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |||||||||||||||| |
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| T |
15284178 |
tcaattatgctattaagggtagtccttaaagcctttctcattggaatataaaatccaatatcactataattaaatttaaattcttgacatctaaaacaac |
15284079 |
T |
|
| Q |
208 |
ctataattgaaccaccctcatagtaaattgaaggaacatccgtaaaccaatgaccaaatgacaacacaatcaagtcaatttgatctatatccccagccca |
307 |
Q |
| |
|
|||||| |||| |||| ||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||| |||| ||| ||||||| ||||| |
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| T |
15284078 |
ctataactgaatcaccttcatagtaaattgaaggaatgtccaaaaaccaatgaccaaatgacaaaacaatcaagtccattttatccatatcccttgccca |
15283979 |
T |
|
| Q |
308 |
catctgatttacttgatctaaatatattgtattatattgtggaccatcctttattctttgatcacccttcacaagaaaaggtgaccaataggctgtcaag |
407 |
Q |
| |
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||| | |||||| ||||| ||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||| |||||||||||| ||||||| |
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| T |
15283978 |
catttcatttacatgatccaaatatattgtattatattgtggcccatcattttttctttgatcacccttcacaagaaatggtgaccaatagaatgtcaag |
15283879 |
T |
|
| Q |
408 |
tttgcgttgtaagaaggaaagtaccaccttccatcagagcctatatggtggacacgtttagg |
469 |
Q |
| |
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||||| |||| ||||||||| |||||| || |||||||||||| |||||||||| ||||||| |
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| T |
15283878 |
tttgcattgtgagaaggaaaataccactttgcatcagagcctaaatggtggacaggtttagg |
15283817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 8 - 181
Target Start/End: Original strand, 15287640 - 15287813
Alignment:
| Q |
8 |
ctttgaacatgtaccacccttatcccaatcaccttcaaaatgagtaggtgagtatgttctcacaattacatcaattccattccctcttacaattttcttc |
107 |
Q |
| |
|
||||||||| |||||| ||||||||||||||||||||||||||| |||||| ||||| | ||||| ||||| |||| ||| ||| | ||| |||| || |
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| T |
15287640 |
ctttgaacaagtaccagccttatcccaatcaccttcaaaatgagcaggtgaaaatgttttaacaatcacatctattctatttcctttagcaactttcctc |
15287739 |
T |
|
| Q |
108 |
tcaattatgctattaagggtagtccttaaagcctttctcattggaacataaaatccaatatcagtataattaaa |
181 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||||||| | |||||||||||| |||| | ||||| |||||| |
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| T |
15287740 |
tcaattatactattaagggtagtcctcaaagcctttcttaatggaacataaaaatcaatttgagtatgattaaa |
15287813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 8 - 180
Target Start/End: Complemental strand, 15262786 - 15262614
Alignment:
| Q |
8 |
ctttgaacatgtaccacccttatcccaatcaccttcaaaatgagtaggtgagtatgttctcacaattacatcaattccattccctcttacaattttcttc |
107 |
Q |
| |
|
|||||||||||| ||| |||||||||||||||| |||||||||| |||||| | ||| |||||||||| |||||||||||| | | ||| |||| || |
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| T |
15262786 |
ctttgaacatgttccagccttatcccaatcaccatcaaaatgagaaggtgaaaaagttttcacaattactccaattccattccttttagcaactttcctc |
15262687 |
T |
|
| Q |
108 |
tcaattatgctattaagggtagtccttaaagcctttctcattggaacataaaatccaatatcagtataattaa |
180 |
Q |
| |
|
|||||||||| |||||| |||||||||||||||||| | |||||| ||||| || |||||||| ||||||| |
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|
| T |
15262686 |
tcaattatgccattaagacaagtccttaaagcctttcttaatggaacgtaaaaaccgatatcagtgtaattaa |
15262614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 108 - 145
Target Start/End: Original strand, 15265594 - 15265631
Alignment:
| Q |
108 |
tcaattatgctattaagggtagtccttaaagcctttct |
145 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
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| T |
15265594 |
tcaattatgctattaagggtagtccttaaagcctttct |
15265631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 108 - 180
Target Start/End: Original strand, 15257069 - 15257141
Alignment:
| Q |
108 |
tcaattatgctattaagggtagtccttaaagcctttctcattggaacataaaatccaatatcagtataattaa |
180 |
Q |
| |
|
|||||||| |||||||| ||||| |||||||||||||||| | | ||||||| ||||| ||||||| ||||| |
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| T |
15257069 |
tcaattatactattaagagtagttcttaaagcctttctcaatacatcataaaacccaatttcagtatgattaa |
15257141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 483 - 530
Target Start/End: Complemental strand, 15274608 - 15274561
Alignment:
| Q |
483 |
gataataagcaaataagggactctatttggttatttgctaaagagtct |
530 |
Q |
| |
|
||||||||||||| |||||||||||||||||| | |||||||||||| |
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|
| T |
15274608 |
gataataagcaaacaagggactctatttggttcctagctaaagagtct |
15274561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 243; Significance: 1e-134; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 8 - 514
Target Start/End: Original strand, 11807200 - 11807706
Alignment:
| Q |
8 |
ctttgaacatgtaccacccttatcccaatcaccttcaaaatgagtaggtgagtatgttctcacaattacatcaattccattccctcttacaattttcttc |
107 |
Q |
| |
|
||||||||| ||||| |||||||||||| ||||||||||||||||||||| ||||||||||||| ||||||||| |||||||| | || |||||| || |
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| T |
11807200 |
ctttgaacaagtacctcccttatcccaagaaccttcaaaatgagtaggtgaaaatgttctcacaatcacatcaatttcattccctttaaccattttcctc |
11807299 |
T |
|
| Q |
108 |
tcaattatgctattaagggtagtccttaaagcctttctcattggaacataaaatccaatatcagtataattaaatttaaattcatgacatctaaaacaac |
207 |
Q |
| |
|
||||||||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||| |||| || |||| || ||||||||| || |||||| |
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|
| T |
11807300 |
tcaattatggtattaagggcaatccttaaagcctttctcattggaacataaaatccaatatcattatatttcgattttaaatcatgacatatagaacaac |
11807399 |
T |
|
| Q |
208 |
ctataattgaaccaccctcatagtaaattgaaggaacatccgtaaaccaatgaccaaatgacaacacaatcaagtcaatttgatctatatccccagccca |
307 |
Q |
| |
|
|||||| |||| || ||||||||||| |||||||| ||| ||||||||||||||||||||||| ||||||||| ||||||||||||||| ||||| |
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|
| T |
11807400 |
ctataactgaatcattctcatagtaaactgaaggaatgtccaaaaaccaatgaccaaatgacaacataatcaagtccatttgatctatatcctttgccca |
11807499 |
T |
|
| Q |
308 |
catctgatttacttgatctaaatatattgtattatattgtggaccatcctttattctttgatcacccttcacaagaaaaggtgaccaataggctgtcaag |
407 |
Q |
| |
|
||| | |||| ||||| |||| |||||||||||| | ||| || |||||| ||||||||||||||||||||||||| |||| |||||||| ||||||| |
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|
| T |
11807500 |
attctcacttacatgatccaaatgtattgtattataatttggcccttcctttcttctttgatcacccttcacaagaaatggtgcccaataggatgtcaag |
11807599 |
T |
|
| Q |
408 |
tttgcgttgtaagaaggaaagtaccaccttccatcagagcctatatggtggacacgtttagggcttgatacagtggataataagcaaataagggactcta |
507 |
Q |
| |
|
||||| |||||||||||||| |||||||| ||| |||||||||||| | || | |||||| |||| ||||||||||||||||||||||||||||||| |
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|
| T |
11807600 |
tttgcattgtaagaaggaaaataccacctcccaatagagcctatatgattgatatatttaggttttgaaacagtggataataagcaaataagggactcta |
11807699 |
T |
|
| Q |
508 |
tttggtt |
514 |
Q |
| |
|
|||||| |
|
|
| T |
11807700 |
gttggtt |
11807706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 203; Significance: 1e-110; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 8 - 514
Target Start/End: Complemental strand, 51383463 - 51382963
Alignment:
| Q |
8 |
ctttgaacatgtaccacccttatcccaatcaccttcaaaatgagtaggtgagtatgttctcacaattacatcaattccattccctcttacaattttcttc |
107 |
Q |
| |
|
||||||||| || || |||||||||||| ||||||||||||||| ||||| ||||||||||||| |||| | ||||||||||| | |||| |||| | |
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| T |
51383463 |
ctttgaacaagttcctcccttatcccaaccaccttcaaaatgagatggtgaaaatgttctcacaatcacataatttccattccctttaacaactttcctt |
51383364 |
T |
|
| Q |
108 |
tcaattatgctattaagggtagtccttaaagcctttctcattggaacataaaatccaatatcagtataattaaatttaaattcatgacatctaaaacaac |
207 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||||||||| | |||||||| ||||||||| ||||| |||||||||| ||||||||| ||||||||| |
|
|
| T |
51383363 |
tcaattatactattaagagtagtccttaaagcctttctcatcgcaacataaattccaatatcggtatagttaaatttaagatcatgacatttaaaacaac |
51383264 |
T |
|
| Q |
208 |
ctataattgaaccaccctcatagtaaattgaaggaacatccgtaaaccaatgaccaaatgacaacacaatcaagtcaatttgatctatatccccagccca |
307 |
Q |
| |
|
||||||| || |||||||||||||||||||||||| || ||||||||||||||||||| |||||||||||||| |||||||||||||| | |||||| |
|
|
| T |
51383263 |
ctataatagactcaccctcatagtaaattgaaggaa---ccataaaccaatgaccaaatgataacacaatcaagtccatttgatctatatctctagccca |
51383167 |
T |
|
| Q |
308 |
catctgatttacttgatctaaatatattgtattatattgtggaccatcctttattctttgatcacccttcacaagaaaaggtgaccaataggctgtcaag |
407 |
Q |
| |
|
| ||| ||| || ||||| ||||| ||||||||||| ||| || ||| |||||||| ||||| ||||||||||||| |||||||| | |||| |
|
|
| T |
51383166 |
cctctcattgacatgatccaaatacattgtattataaattggccctctgttttttctttgaacacccctcacaagaaaaggcgaccaataaaaagacaag |
51383067 |
T |
|
| Q |
408 |
tttgcgttgtaagaaggaaagtaccaccttccatcagagcctatatggtggacacgtttagggcttgatacagtggataataagcaaataagggactcta |
507 |
Q |
| |
|
||||| |||| |||||||||||||||| ||| |||||||| |||| ||||||||||||| |||| |||||||||||||||| ||||||||||| | |
|
|
| T |
51383066 |
tttgcattgtgagaaggaaagtaccactttc---tagagcctagatggcggacacgtttaggttttgaagcagtggataataagcatataagggactcaa |
51382970 |
T |
|
| Q |
508 |
tttggtt |
514 |
Q |
| |
|
||||||| |
|
|
| T |
51382969 |
tttggtt |
51382963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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