View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5313-Insertion-8 (Length: 384)
Name: NF5313-Insertion-8
Description: NF5313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5313-Insertion-8 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 7 - 384
Target Start/End: Original strand, 41314034 - 41314411
Alignment:
| Q |
7 |
aaaaaccatccactaaatgtaggtaagcttccaagtcatgacaacatgccatgtcagcatccggcttcaaaaatggagacatcttcgtatccacacgtag |
106 |
Q |
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| T |
41314034 |
aaaaaccatccactaaatgtaggtaagcttccaagtcatgacaacatgccatgtcagcatccggcttcaaaaatggagacatcttcgtatccacacgtag |
41314133 |
T |
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| Q |
107 |
ctcagatcccacatgagtgtaagccaatggtgttttctcatcaagcatgtcaactacaccaccaaagttaaaacttcttaatttttgttcaaactcttca |
206 |
Q |
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| T |
41314134 |
ctcagatcccacatgagtgtaagccaatggtgttttctcatcaagcatgtcaactacaccaccaaagttaaaacttcttaatttttgttcaaactcttca |
41314233 |
T |
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| Q |
207 |
ctcaataacattccaggaactctagtaatcacatcttgggaattcactattctcaaaactttcacgttttgggaagtgattttgttcccataagccttgt |
306 |
Q |
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| T |
41314234 |
ctcaataacattccaggaactctagtaatcacatcttgggaattcactattctcaaaactttcacgttttgggaagtgattttgttcccataagccttgt |
41314333 |
T |
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| Q |
307 |
taccaactttgggtccaccaaaggaaaaaacagccacgggtggcacgtttggactacaagtgctgatgtcatcagcta |
384 |
Q |
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| T |
41314334 |
taccaactttgggtccaccaaaggaaaaaacagccacgggtggcacgtttggattacaagtgctgatgtcatcagcta |
41314411 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 12 - 105
Target Start/End: Complemental strand, 4167698 - 4167605
Alignment:
| Q |
12 |
ccatccactaaatgtaggtaagcttccaagtcatgacaacatgccatgtcagcatccggcttcaaaaatggagacatcttcgtatccacacgta |
105 |
Q |
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| T |
4167698 |
ccatccactaaatgtaaataagcctctagatcatgacaacaagctatgtcagcatcgggcttcaagtatggtgacatcttagtattaacacgta |
4167605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 318 - 358
Target Start/End: Complemental strand, 4167389 - 4167349
Alignment:
| Q |
318 |
ggtccaccaaaggaaaaaacagccacgggtggcacgtttgg |
358 |
Q |
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| T |
4167389 |
ggtccgccaaatgaaaaaacagccacgggtggcacgtttgg |
4167349 |
T |
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