View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5313_high_7 (Length: 239)
Name: NF5313_high_7
Description: NF5313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5313_high_7 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 147; Significance: 1e-77; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 33 - 212
Target Start/End: Complemental strand, 9346718 - 9346537
Alignment:
| Q |
33 |
tttcttatgtgacatgtaaacaaattcaatttaaatttgtttggaagcatattgacctttagcaccttggtcgtaataatgtttcgtaccaatttgtgta |
132 |
Q |
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| T |
9346718 |
tttcttatgtgacatttaaacgaattcaatttaaatttgtttggaagcatattgacctttagcatcttggtcgtaataatgtttcataccaatttgtgta |
9346619 |
T |
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| Q |
133 |
tggtgcttgcagctttggatgcagaacatttcctgcaaggggttggtttaca--aggctaagagtgattgactagctaaggg |
212 |
Q |
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| T |
9346618 |
gggtgcttgcagctttggatgcagaacatttcctgcaaggggttggtttacaacaggctaagagtgattgactagataaggg |
9346537 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 33 - 212
Target Start/End: Complemental strand, 9356128 - 9355947
Alignment:
| Q |
33 |
tttcttatgtgacatgtaaacaaattcaatttaaatttgtttggaagcatattgacctttagcaccttggtcgtaataatgtttcgtaccaatttgtgta |
132 |
Q |
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| T |
9356128 |
tttcttatgtgacatttaaacgaattcaatttaaatttgtttggaagcatattgacctttagcatcttggtcctaataatgtttcatactaatttgtgta |
9356029 |
T |
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| Q |
133 |
tggtgcttgcagctttggatgcagaacatttcctgcaaggggttggtttaca--aggctaagagtgattgactagctaaggg |
212 |
Q |
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| T |
9356028 |
gggtgcttgcagctttggatgcagaacatttcctgcaaggggttggtttacaacaggctaagagtgattgactagctaaggg |
9355947 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 152 - 239
Target Start/End: Complemental strand, 9453113 - 9453024
Alignment:
| Q |
152 |
tgcagaacatttcctgcaaggggttggtttacaa--ggctaagagtgattgactagctaaggggtgtccagaactcagaagatgcttaat |
239 |
Q |
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| T |
9453113 |
tgcagaacatttcctgcaaggggttggtgtacaacaggctaagagtgattgactagcaaaggggtgtccagaactcagaagatgcgtaat |
9453024 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 158 - 239
Target Start/End: Complemental strand, 9401091 - 9401008
Alignment:
| Q |
158 |
acatttcctgcaaggggttggtttacaa--ggctaagagtgattgactagctaaggggtgtccagaactcagaagatgcttaat |
239 |
Q |
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| T |
9401091 |
acatttcttgcaaggggttggtttacaacaggctaagagtgattaactagctaaggagtgtccagaactcagaagatgcttaat |
9401008 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 158 - 239
Target Start/End: Complemental strand, 9410929 - 9410846
Alignment:
| Q |
158 |
acatttcctgcaaggggttggtttacaa--ggctaagagtgattgactagctaaggggtgtccagaactcagaagatgcttaat |
239 |
Q |
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| T |
9410929 |
acatttcttgaaaggggttgttttacaacagactaagagtgattaactagctaaggagtgtccagaactcagaagatgcttaat |
9410846 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 134 - 239
Target Start/End: Complemental strand, 9431959 - 9431852
Alignment:
| Q |
134 |
ggtgcttgcagctttggatgcagaacatttcctgcaaggggttggtttacaa--ggctaagagtgattgactagctaaggggtgtccagaactcagaaga |
231 |
Q |
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| T |
9431959 |
ggtgcttgcagatttgaatgaagcatatttccttcaaggggttggttcacaacaggctaagagtgattgactagaaaaagggtgtcctgaactcagacga |
9431860 |
T |
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| Q |
232 |
tgcttaat |
239 |
Q |
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| T |
9431859 |
tgcttaat |
9431852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 207 - 239
Target Start/End: Complemental strand, 9369069 - 9369037
Alignment:
| Q |
207 |
taaggggtgtccagaactcagaagatgcttaat |
239 |
Q |
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| T |
9369069 |
taaggggtgtccagaactcagaagatgcttaat |
9369037 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 141 - 239
Target Start/End: Complemental strand, 10064184 - 10064084
Alignment:
| Q |
141 |
gcagctttggatgcagaacatttcctgcaaggggttggtttaca--aggctaagagtgattgactagctaaggggtgtccagaactcagaagatgcttaa |
238 |
Q |
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| T |
10064184 |
gcagctttggatgcagaacatttcctgcaaggagttggtttacagcaggataagagtgattgactagctaaagggtgtccagaactcacaagatgcttaa |
10064085 |
T |
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| Q |
239 |
t |
239 |
Q |
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| T |
10064084 |
t |
10064084 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 139 - 211
Target Start/End: Original strand, 18583928 - 18584004
Alignment:
| Q |
139 |
ttgcagctttggatgcagaacattt--cctgcaaggggttggtttaca--aggctaagagtgattgactagctaagg |
211 |
Q |
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| T |
18583928 |
ttgcagctttggatgcagaacattttccctccaaggagttggtttacaacaggctaagagtgattgactagttaagg |
18584004 |
T |
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