View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5313_low_10 (Length: 216)
Name: NF5313_low_10
Description: NF5313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5313_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 168; Significance: 3e-90; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 19 - 202
Target Start/End: Complemental strand, 31048067 - 31047884
Alignment:
| Q |
19 |
atattacaatctctaacttctcatattattttcaaatcaactaaagaatcacttgattttcgttagagaaaaaacaatctacacctatggattcaaatat |
118 |
Q |
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| T |
31048067 |
atattacaatctctaacttctcatattattttcaaatcaactaaagaatcacttgattttcgttagagaaaaaacaatctacacctatggattcaaatat |
31047968 |
T |
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| Q |
119 |
gttgagtcaaaatctattgagtctaagcatgttaagaaccatttcgctatgtcagttttctcattttatgattatgtgcctttg |
202 |
Q |
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| T |
31047967 |
gttgagtcaaaatctattgagtctaagcatgttaagaaccattccgttatgtcagttttctcattttatgactatgtgtctttg |
31047884 |
T |
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Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 108 - 202
Target Start/End: Complemental strand, 33538292 - 33538198
Alignment:
| Q |
108 |
gattcaaatatgttgagtcaaaatctattgagtctaagcatgttaagaaccatttcgctatgtcagttttctcattttatgattatgtgcctttg |
202 |
Q |
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| T |
33538292 |
gattcaaatatgttgagtctaaatgtatcgagtgtaagcatggtaagtacaaattcgatatgttagatttctcattttataactatgtgtctttg |
33538198 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 108 - 196
Target Start/End: Complemental strand, 33535257 - 33535169
Alignment:
| Q |
108 |
gattcaaatatgttgagtcaaaatctattgagtctaagcatgttaagaaccatttcgctatgtcagttttctcattttatgattatgtg |
196 |
Q |
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|||||||||||| |||||| |||| |||||||| ||||||||||||| || | ||| ||||| || ||||||||||||| | |||||| |
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| T |
33535257 |
gattcaaatatgctgagtctaaatgtattgagtgtaagcatgttaagtacaaattcaatatgttagatttctcattttataactatgtg |
33535169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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