View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5313_low_2 (Length: 486)
Name: NF5313_low_2
Description: NF5313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5313_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 446; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 19 - 484
Target Start/End: Complemental strand, 37809461 - 37808996
Alignment:
| Q |
19 |
attctattggttggagatgctagttatgctaacatgtatcttactaatggcactggttcagattgctactcttgttcattttctaatactcctatccatg |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37809461 |
attctattggttggagatgctagttatgctaacatgtatcttactaatggcactggttcagattgctactcttgttcattttctaatactcctatccatg |
37809362 |
T |
|
| Q |
119 |
aaacatatcaaccacgttgggattattggggaaggtaaaattttcacttcatcttaattttgacttgagatttcttggttcaaacccagtttatgaaatc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
37809361 |
aaacatatcaaccacgttgggattattggggaaggtaaaatttttacttcatcttaattttgacttgagatttcttggttcaaacccagtttatgaagtc |
37809262 |
T |
|
| Q |
219 |
aatgttgattatttattcaggtacatggaaccattgatttccagtgtccctgtaatggtagtagaagggaatcatgagatagaagaacaagctgaaaaca |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37809261 |
aatgttgattatttattcaggtacatggaaccattgatttccagtgtcccggtaatggtagtagaagggaatcatgagatagaagaacaagctgaaaaca |
37809162 |
T |
|
| Q |
319 |
agacattcgttgcttatagttctcgatttgcatttccgtcggaagagagtggatcatcttcaactttatattattctttcaatgcgggaggaatacattt |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37809161 |
agacattcgttgcttatagttctcgatttgcatttccgtcggaagagagtgggtcatcttcaactttatattattctttcaatgcgggaggaatacattt |
37809062 |
T |
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| Q |
419 |
tataatgctcggttcctacatatcatacgacaaatcaggttaactcttggttcatcctttgcttct |
484 |
Q |
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| T |
37809061 |
tataatgctcggttcctacatatcatacgacaaatcaggttaactcttggttcatccttttcttct |
37808996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 215 - 484
Target Start/End: Complemental strand, 37816679 - 37816410
Alignment:
| Q |
215 |
aatcaatgttgattatttattcaggtacatggaaccattgatttccagtgtccctgtaatggtagtagaagggaatcatgagatagaagaacaagctgaa |
314 |
Q |
| |
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||||||||| |||||| |||||||||||||||||| ||||| | |||||||| |||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
37816679 |
aatcaatgtgaattattgattcaggtacatggaacctctgattgctagtgtcccaataatggtagtggaagggaatcatgagatagaagaacaagctgaa |
37816580 |
T |
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| Q |
315 |
aacaagacattcgttgcttatagttctcgatttgcatttccgtcggaagagagtggatcatcttcaactttatattattctttcaatgcgggaggaatac |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||| ||||||||||||||||| |||||||||| |
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| T |
37816579 |
aacaagacattcgttgcttatagttctcgatttgcatttccgtcagaagagagtggatcatcatccactttctattattctttcaatgcaggaggaatac |
37816480 |
T |
|
| Q |
415 |
attttataatgctcggttcctacatatcatacgacaaatcaggttaactcttggttcatcctttgcttct |
484 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||| |
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| T |
37816479 |
attttataatgctcggtgcctacatatcatacgacaaatcaggttaactcttggttcatcattttcttct |
37816410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 19 - 161
Target Start/End: Complemental strand, 37816929 - 37816787
Alignment:
| Q |
19 |
attctattggttggagatgctagttatgctaacatgtatcttactaatggcactggttcagattgctactcttgttcattttctaatactcctatccatg |
118 |
Q |
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|||||||||||||| |||| ||||||||||||| | |||||||||||||| ||||||||||||||||| ||||| || ||||| |||| || ||||| | |
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| T |
37816929 |
attctattggttggtgatgttagttatgctaacctatatcttactaatggtactggttcagattgctattcttgctcgttttcgaatagccccatccagg |
37816830 |
T |
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| Q |
119 |
aaacatatcaaccacgttgggattattggggaaggtaaaattt |
161 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
37816829 |
aaacatatcaaccgcgttgggattattggggaaggtaaaattt |
37816787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 271 - 427
Target Start/End: Original strand, 19906755 - 19906911
Alignment:
| Q |
271 |
taatggtagtagaagggaatcatgagatagaagaacaagctgaaaacaagacattcgttgcttatagttctcgatttgcatttccgtcggaagagagtgg |
370 |
Q |
| |
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||||||| |||||||| |||||||| || ||| |||| ||| |||| ||||||| || ||||| ||||| | ||||| || || || ||||| ||||| |
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| T |
19906755 |
taatggtggtagaaggaaatcatgaaattgaaaaacaggctagaaaccagacatttgtggcttacagttccaggtttgcgttcccctctgaagaaagtgg |
19906854 |
T |
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| Q |
371 |
atcatcttcaactttatattattctttcaatgcgggaggaatacattttataatgct |
427 |
Q |
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||| || || || || || |||||||||||||| || || || |||||||| ||||| |
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| T |
19906855 |
atcgtcatccacattctactattctttcaatgctgggggcattcattttattatgct |
19906911 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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