View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5313_low_3 (Length: 458)
Name: NF5313_low_3
Description: NF5313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5313_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 358; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 6 - 442
Target Start/End: Original strand, 22749894 - 22750324
Alignment:
| Q |
6 |
caaaggaagaaaataaacacgggagaacacatcatttagtcatggagttcgctcaattgttcctacgtctacgagagcagggtggcttctgtatgttttc |
105 |
Q |
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||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22749894 |
caaaggaagaaaataaacacgggagaacacatcgtttggtcatggagttcgctcaattgttcctacgtctacgagagcagggtggcttctgtatgttttc |
22749993 |
T |
|
| Q |
106 |
tgttatgcaacaaattagtgtcataaagtacattgtttaaaactcgcagcgaagtttactagtttacccctaatcgagggcttcacccccgaccctctta |
205 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| ||||||||| ||||| |
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| T |
22749994 |
tgttatgcaacaaattagtgtcacaaagtacattgtttaaaactcgcagcgaagtttactagttaacccctaatagagggcttcgcccccgaccatctta |
22750093 |
T |
|
| Q |
206 |
gttataagttggaacgtaataaacaattaatctgacaagcccaacagacaggcgctctccttcgctcgttatgcttttatctcatctgtccacatatcag |
305 |
Q |
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||| ||||||||||| |||||||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
22750094 |
gttgtaagttggaacctaataaacaattaatcggacaagcccaaaggacaggcgctctgcttcgctcgttatgcttttatctcatctgtccacatatcag |
22750193 |
T |
|
| Q |
306 |
cgaatagctgccatcttcaacaagagcataataggaaagaagaatgaatgtaagtgtgtgcataacataatttgaatattgaacatagtttctgaactca |
405 |
Q |
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| T |
22750194 |
cgaatagctgccatcttcaacaagagcataatagga------aatgaatgtaagtgtgtgcataacataatttgaatatttaacatagtttctgaactca |
22750287 |
T |
|
| Q |
406 |
ttaaacaaatgaatgaatgatttattagggtcattgg |
442 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |
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| T |
22750288 |
ttaaacaaatgaatgaatgatttattagggtcattgg |
22750324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 8 - 442
Target Start/End: Complemental strand, 22689173 - 22688744
Alignment:
| Q |
8 |
aaggaagaaaataaacacgggagaacacatcatttagtcatggagttcgctcaattgttcctacgtctacgagagcagggtggcttctgtatgttttctg |
107 |
Q |
| |
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||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22689173 |
aaggaagaaaataaacacgggagaacacatcgtttggtcatggagttcgctcaattgttcctacgtctacgagagcagggtggcttctgtatgttttctg |
22689074 |
T |
|
| Q |
108 |
ttatgcaacaaattagtgtcataaagtacattgtttaaaactcgcagcgaagtttactagtttacccctaatcgagggcttcacccccgaccctcttagt |
207 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| ||||||||| ||||||| |
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| T |
22689073 |
ttatgcaacaaattagtgtcacaaagtacattgtttaaaactcgcagcgaagtttactagttaacccctaatagagggcttcgcccccgaccatcttagt |
22688974 |
T |
|
| Q |
208 |
tataagttggaacgtaataaacaattaatctgacaagcccaacagacaggc-gctctccttcgctcgttatgcttttatctcatctgtccacatatcagc |
306 |
Q |
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| ||||||||||| |||||||||||||||| ||||||||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
22688973 |
tgtaagttggaacctaataaacaattaatcggacaagcccaaaggacaggcggctctgcttcgctcgttatgcttttatctcatctgtccacatatcagc |
22688874 |
T |
|
| Q |
307 |
gaatagctgccatcttcaacaagagcataataggaaagaagaatgaatgtaagtgtgtgcataacataatttgaatattgaacatagtttctgaactcat |
406 |
Q |
| |
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|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
22688873 |
gaatagctcccatcttcaacaagagcataatagga------aatgaatgtaagtgtgtgcataacataatttgaatattggacatagtttctgaactcat |
22688780 |
T |
|
| Q |
407 |
taaacaaatgaatgaatgatttattagggtcattgg |
442 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |
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|
| T |
22688779 |
taaacaaatgaatgaatgatttattagggtcattgg |
22688744 |
T |
|
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