View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5313_low_4 (Length: 373)
Name: NF5313_low_4
Description: NF5313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5313_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 256; Significance: 1e-142; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 17 - 300
Target Start/End: Complemental strand, 11269202 - 11268919
Alignment:
| Q |
17 |
aaatatgaatagctggaaaaacacactgtccttgctaatccatgtccagtattttaacacttggaagctgaaaagtgcatgatctgctatgcaggccgtg |
116 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
11269202 |
aaatatgaatagctggaaaaacacacggtccttgctaatccatgtccagtattttaacacttggaagctgaaaagtgcatggtctgctatgcaggccgtg |
11269103 |
T |
|
| Q |
117 |
catttttgctgttagctagagctgttacaaaactctttggttttcctatttttaagcttgtaatatgagtttaatgcattgtcttatggttttaggttat |
216 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||| |
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| T |
11269102 |
cgtttttgctgttagctagagctgttacaaaactctttggttttcctatttttatgcttgtaatatgagtttaaggcattgtcttaaggttttaggttat |
11269003 |
T |
|
| Q |
217 |
aaaaaggtcttccatcaaacttgtaatcatcttggaatccagtgaacttgttttagattgaatcaaagttaacattgttatgag |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
11269002 |
aaaaaggtcttccatcaaacttgtaatcatcttggaatccagtgaacttattttagattgaatcaaagttaacattgttatgag |
11268919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 18 - 300
Target Start/End: Original strand, 11281000 - 11281282
Alignment:
| Q |
18 |
aatatgaatagctggaaaaacacactgtccttgctaatccatgtccagtattttaacacttggaagctgaaaagtgcatgatctgctatgcaggccgtgc |
117 |
Q |
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||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| ||||||| |
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| T |
11281000 |
aatatgaatagctagaaaaacacacggtccttgctaatccatgtccagtattttaacacttggaagctgaaaagtgcatggtctgttatgcaagccgtgc |
11281099 |
T |
|
| Q |
118 |
atttttgctgttagctagagctgttacaaaactctttggttttcctatttttaagcttgtaatatgagtttaatgcattgtcttatggttttaggttata |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |
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| T |
11281100 |
gtttttgctgttagctagagctgttacaaaactctttggttttcctatttttaagcttgtaatatgagtttaatgcattgtgttaaggttttaggttata |
11281199 |
T |
|
| Q |
218 |
aaaaggtcttccatcaaacttgtaatcatcttggaatccagtgaacttgttttagattgaatcaaagttaacattgttatgag |
300 |
Q |
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|||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11281200 |
aaaaggtcttccatcaaacttgtaatcatcttcgaatccggtgaacttgttttagattgaatcaaagttaacattgttatgag |
11281282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 21 - 295
Target Start/End: Original strand, 11242190 - 11242459
Alignment:
| Q |
21 |
atgaatagctggaaaaacacactgtccttgctaatccatgtccagtattttaacacttggaagctgaaaagtgcatgatctgctatgcaggccgtgcatt |
120 |
Q |
| |
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|||||||||||||||||||||| ||||||||| | ||||||||| |||||||||||||||||||||||||||||| |||| | || |||| || |
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| T |
11242190 |
atgaatagctggaaaaacacacggtccttgctga-ccatgtccaatattttaacacttggaagctgaaaagtgcacgatccgg-----agaccgtatgtt |
11242283 |
T |
|
| Q |
121 |
tttgctgttagctagagctgttacaaaactctttggttttcctatttttaagcttgtaa-tatgagtttaatgcattgtcttatggttttaggttataaa |
219 |
Q |
| |
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|||||||| ||| |||||||||| |||||||||||||||||||||||| |||||||||| | ||||||||||||||||||| ||||||||| |||||| |
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| T |
11242284 |
tttgctgtcagcaagagctgttagaaaactctttggttttcctattttaaagcttgtaaatccgagtttaatgcattgtcttgaggttttaggctataaa |
11242383 |
T |
|
| Q |
220 |
aaggtcttccatcaaacttgtaatcatcttggaatccagtgaacttgttttagattgaatcaaagttaacattgtt |
295 |
Q |
| |
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||||||||||||| || ||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||| |
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| T |
11242384 |
taggtcttccatcatacctgtaatcattttggaatcttgtgaacttgttttagattgaatcaaacttaacattgtt |
11242459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 78; Significance: 3e-36; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 71 - 254
Target Start/End: Original strand, 27318359 - 27318544
Alignment:
| Q |
71 |
taacacttggaagctgaaaagtgcatgatctgctatgcaggccgtgcatttttgctgttagctagagctgttacaaaactctttggtttt-cctattttt |
169 |
Q |
| |
|
|||||| |||||||||||||||||||| | |||| ||||| |||||| |||||||||| |||| |||||||||||||||||||||||||| |||||||| |
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| T |
27318359 |
taacacgtggaagctgaaaagtgcatggtttgctgtgcagaccgtgcgtttttgctgtcagctggagctgttacaaaactctttggttttccctatttta |
27318458 |
T |
|
| Q |
170 |
aagcttgt-aatatgagtttaatgcattgtcttatggttttaggttataaaaaggtcttccatcaaacttgtaatcatcttggaat |
254 |
Q |
| |
|
|||||||| ||| ||||||||||| ||||||| | | || |||||||| ||||| ||| ||| | |||||||||||||||||| |
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| T |
27318459 |
aagcttgtaaattcgagtttaatgccttgtcttgagaatctatgttataaataggtcctccgtcagatttgtaatcatcttggaat |
27318544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 219 - 295
Target Start/End: Complemental strand, 12727397 - 12727321
Alignment:
| Q |
219 |
aaaggtcttccatcaaacttgtaatcatcttggaatccagtgaacttgttttagattgaatcaaagttaacattgtt |
295 |
Q |
| |
|
||||||| ||||||| | ||||||||||||||||||| || |||||||||| |||||||||||||||||||||||| |
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| T |
12727397 |
aaaggtcctccatcagatttgtaatcatcttggaatcttgtcaacttgtttttgattgaatcaaagttaacattgtt |
12727321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 244 - 295
Target Start/End: Complemental strand, 17735244 - 17735193
Alignment:
| Q |
244 |
catcttggaatccagtgaacttgttttagattgaatcaaagttaacattgtt |
295 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||| |||||| |
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| T |
17735244 |
catcttggaatctggtgaacttgttttagattgaatcaaagttaatattgtt |
17735193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 64; Significance: 7e-28; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 140 - 254
Target Start/End: Complemental strand, 42687956 - 42687841
Alignment:
| Q |
140 |
gttacaaaactctttggttttcctatttttaagcttgtaa-tatgagtttaatgcattgtcttatggttttaggttataaaaaggtcttccatcaaactt |
238 |
Q |
| |
|
||||| ||||||||||||||||| ||||| |||||| ||| ||||||||||||| ||||||| ||||||||| |||||| ||||| |||||||||||| |
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| T |
42687956 |
gttacgaaactctttggttttcccattttaaagcttataaatatgagtttaatgtcttgtcttgaggttttaggctataaacaggtcctccatcaaactt |
42687857 |
T |
|
| Q |
239 |
gtaatcatcttggaat |
254 |
Q |
| |
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|||||||||||||||| |
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| T |
42687856 |
gtaatcatcttggaat |
42687841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 183 - 249
Target Start/End: Original strand, 20684885 - 20684951
Alignment:
| Q |
183 |
gagtttaatgcattgtcttatggttttaggttataaaaaggtcttccatcaaacttgtaatcatctt |
249 |
Q |
| |
|
|||||||||| ||||||| ||||| ||| |||||| ||||| ||||||| ||||||||||||||| |
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| T |
20684885 |
gagtttaatgtcttgtcttgaggtttcaggctataaataggtcctccatcatacttgtaatcatctt |
20684951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 97
Target Start/End: Complemental strand, 42688011 - 42687982
Alignment:
| Q |
68 |
ttttaacacttggaagctgaaaagtgcatg |
97 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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| T |
42688011 |
ttttaacacttggaagctgaaaagtgcatg |
42687982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 67 - 249
Target Start/End: Complemental strand, 9798816 - 9798640
Alignment:
| Q |
67 |
attttaacacttggaagctgaaaagtgcatgatctgctatgcaggccgtgcatttttgctgttagctagagctgttacaaaactctttggttt-tcctat |
165 |
Q |
| |
|
||||||||||||||||| ||||||||||| | | | ||||| |||||| |||||||||| |||||||||||||||||||||||||||||| |||||| |
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| T |
9798816 |
attttaacacttggaagttgaaaagtgcacggt----tgtgcagaccgtgcgtttttgctgtcagctagagctgttacaaaactctttggtttctcctat |
9798721 |
T |
|
| Q |
166 |
ttttaagcttgt-aatatgagtttaatgcattgtcttatggttttaggttataaaaaggtcttccatcaaacttgtaatcatctt |
249 |
Q |
| |
|
||| |||||||| ||| ||||||||||| |||||| |||| |||| |||||| |||| |||| |||||||||||||||| |
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|
| T |
9798720 |
tttaaagcttgtaaattcgagtttaatgccttgtctagaggttctaggctataaataggt----catccaacttgtaatcatctt |
9798640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 68 - 179
Target Start/End: Original strand, 15201683 - 15201794
Alignment:
| Q |
68 |
ttttaacacttggaagctgaaaagtgcatgatctgctatgcaggccgtgcatttttgctgttagctagagctgttacaaaactctttggttttcctattt |
167 |
Q |
| |
|
|||||||||||| ||||||||||||||| | ||| || |||| |||||| |||||| ||| | |||||||||||||||||||||||||||||||||||| |
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| T |
15201683 |
ttttaacacttgtaagctgaaaagtgcacggtctactgtgcataccgtgcgtttttgttgtcaactagagctgttacaaaactctttggttttcctattt |
15201782 |
T |
|
| Q |
168 |
ttaagcttgtaa |
179 |
Q |
| |
|
| ||| |||||| |
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|
| T |
15201783 |
taaagtttgtaa |
15201794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 114 - 254
Target Start/End: Complemental strand, 16999473 - 16999332
Alignment:
| Q |
114 |
gtgcatttttgctgttagctagagctgttacaaaactctttggttttcctatttttaagcttgt-aatatgagtttaatgcattgtcttatggttttagg |
212 |
Q |
| |
|
||||||||||||||| ||| ||| ||||||||||||||| |||||||||||||| |||||||| ||| |||||||||| |||||| ||||||||| |
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|
| T |
16999473 |
gtgcatttttgctgtcagcaggagatgttacaaaactcttcggttttcctattttaaagcttgtaaatccgagtttaatgtcatgtcttgaggttttagg |
16999374 |
T |
|
| Q |
213 |
ttataaaaaggtcttccatcaaacttgtaatcatcttggaat |
254 |
Q |
| |
|
|||||| ||||| || |||| |||| ||||||||||||||| |
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|
| T |
16999373 |
ctataaataggtcctcaatcagacttataatcatcttggaat |
16999332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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