View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5313_low_7 (Length: 258)
Name: NF5313_low_7
Description: NF5313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5313_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 47240271 - 47240516
Alignment:
| Q |
1 |
tcaaattccaacaaacaatgaagaaaaattaatctaccaactaattttccgagaagatgcataaatactccatatatgaagttttatttaataatacaat |
100 |
Q |
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| T |
47240271 |
tcaaattccaacaaacaatgaagaaaaattaatctaccaactaattttgcgagaagatgcataaatactccatatatgaagttttttttaataatacaat |
47240370 |
T |
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| Q |
101 |
aatatatggagtaattactaattttctgaaaagatacaaaaataattaaaatttataaaagcaattctatatatgaagcttttttaaatgcatatatcaa |
200 |
Q |
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| T |
47240371 |
aatatatggagtaattactaattttctgaaaagatacaaaaataattaaaatttataaaagcaattctatatatgaagcttttttaaatgcatatatcaa |
47240470 |
T |
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| Q |
201 |
gttaaaaacatgtacgaaaaatcaaatcatccagctcaaaaagaatt |
247 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
47240471 |
gttaaaaacatgtacg-aaaatcaaatcatccagctcaaaaagaatt |
47240516 |
T |
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