View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5313_low_9 (Length: 239)
Name: NF5313_low_9
Description: NF5313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5313_low_9 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 18 - 239
Target Start/End: Original strand, 47240057 - 47240278
Alignment:
| Q |
18 |
tgaacataaataaaacgtcaacatgatgataattcagttggtagggacattgtattatatatactaaactcgatttaaattcaaattctctatttatttg |
117 |
Q |
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| T |
47240057 |
tgaacataaataaaacgtcaccatgaagataatttagttggtatggacattgtattatatataccgaactcgatttaaatttaaattctctatttatttg |
47240156 |
T |
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| Q |
118 |
tcttaaggatgaatttatggtcattagactacttaacgataatttacaatataggaaagttaagtaattcaactgatttaagctaatatatataagcaat |
217 |
Q |
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| T |
47240157 |
tcttaaggatgaatttatggtcattagactacttaacgataatttacaatatagaaaggttaagtaattcaactgatttaaactaatatatataagcaat |
47240256 |
T |
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| Q |
218 |
tgaatgttctagattcaaattc |
239 |
Q |
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| T |
47240257 |
tgaatgttctagattcaaattc |
47240278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 80
Target Start/End: Complemental strand, 51759719 - 51759686
Alignment:
| Q |
47 |
taattcagttggtagggacattgtattatatata |
80 |
Q |
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||||||||||||||||||||||||||||| |||| |
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| T |
51759719 |
taattcagttggtagggacattgtattatttata |
51759686 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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