View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5314-Insertion-2 (Length: 427)

Name: NF5314-Insertion-2
Description: NF5314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5314-Insertion-2
NF5314-Insertion-2
[»] chr2 (1 HSPs)
chr2 (10-427)||(25788300-25788728)


Alignment Details
Target: chr2 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 10 - 427
Target Start/End: Complemental strand, 25788728 - 25788300
Alignment:
Q  10 aagctgcacgaaggtcacaataaattcaacttcaatcattccgtctctaagcgaaaactacaaaattgaaaaatcactatcaaagcaggagaccctggcc 109  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25788728 aagctgcacgaaggtcacaataaattcaacttcaatcattcagtctctaagcgaaaactacaaaattgaaaaatcactatcaaagcaggagaccctggcc 25788629  T
Q  110 agacttgtggtgaaacttcttcaaaacccccaattagatgcacctacannnnnnnnaataaagcagacagatatattacatcagaaaatatgttatagat 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||    
T  25788628 agacttgtggtgaaacttcttcaaaacccccaattagatgcacctacattttttttaataaagcagacagatatattacatcagaaaatatgttatagat 25788529  T
Q  210 aaaaaagagcaaccaaataactaaatggaaatnnnnnnn-----------tccctatagaaagtagagaaacaaagaataagaaaagcacatcgaattca 298  Q
    ||||||||||||||||||||||||||||||||                  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25788528 aaaaaagagcaaccaaataactaaatggaaataaaaaaaaataaaaaaaatccctatagaaagtagagaaacaaagaataagaaaagcacatcgaattca 25788429  T
Q  299 gtctccaaactgttgtcaacaagtagcgataacatttgagagaggcccatttctacaatctttggtgaatccatatgggaaaccgacgtcctgcagtatc 398  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25788428 gtctccaaactgttgtcaacaagtagcgataacatttgagagaggcccatttctacaatctttggtgaatccatatgggaaaccgacgtcctgcagtatc 25788329  T
Q  399 aaattaaaaatgataaaataagtaattga 427  Q
    |||||||||||||||||||||||||||||    
T  25788328 aaattaaaaatgataaaataagtaattga 25788300  T

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