View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5314-Insertion-4 (Length: 343)
Name: NF5314-Insertion-4
Description: NF5314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5314-Insertion-4 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 251; Significance: 1e-139; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 81 - 343
Target Start/End: Complemental strand, 27929564 - 27929302
Alignment:
| Q |
81 |
cgaccatgaaaaccacttacaaagttggacaacttggttggtgtaaaagggttgaaatcaaatggaacttgagccacgaagagctccagataatgaagta |
180 |
Q |
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| T |
27929564 |
cgaccatgaaaaccacttacaaagttggacaacttggttggtgtaaaagggttgaaatcaaatggaacttgagccacgaagagctccagataatgaagca |
27929465 |
T |
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| Q |
181 |
aaaagaggccacaatcaaatgagttttcctgctgtggtatctgtcaaggacattcaatcacaacattagtaaaaacacaatgaaatggagaaaatagaaa |
280 |
Q |
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| T |
27929464 |
aaaagaggccacaatcaaatgagttttcctgctgtggtatctgtcaaggacattcaatcacaacattagtaaaaacacaatgaattggagaaaatagaaa |
27929365 |
T |
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| Q |
281 |
gttgttcgatgataactcaattaatcatcagccagagataggcgagaaataaattcaaaaagc |
343 |
Q |
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| T |
27929364 |
gttgttcgatgataactcaactaatcatcagccagagataggcgagaaataaattcaaaaagc |
27929302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 83 - 343
Target Start/End: Original strand, 28082275 - 28082535
Alignment:
| Q |
83 |
accatgaaaaccacttacaaagttggacaacttggttggtgtaaaagggttgaaatcaaatggaacttgagccacgaagagctccagataatgaagtaaa |
182 |
Q |
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||||||||||||||||||||||||||| | |||||| || | | ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |
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| T |
28082275 |
accatgaaaaccacttacaaagttggaacaattggttagtctcagagggttgaaatcaaatggaacttgagccacgaagagctctagataatgaagcaaa |
28082374 |
T |
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| Q |
183 |
aagaggccacaatcaaatgagttttcctgctgtggtatctgtcaaggacattcaatcacaacattagtaaaaacacaatgaaatggagaaaatagaaagt |
282 |
Q |
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| T |
28082375 |
aagaggccacaatcaaatgagttttcctgctgtggtacctgtcaaggacattcagtcacaacattagtaaaagcacaatcaaatggagaaaatagaaagt |
28082474 |
T |
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| Q |
283 |
tgttcgatgataactcaattaatcatcagccagagataggcgagaaataaattcaaaaagc |
343 |
Q |
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| T |
28082475 |
tgttcgatgataactcaactaatcatcagccagagataggcgagaaataaattcaaaaagc |
28082535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 83 - 341
Target Start/End: Complemental strand, 27935593 - 27935335
Alignment:
| Q |
83 |
accatgaaaaccacttacaaagttggacaacttggttggtgtaaaagggttgaaatcaaatggaacttgagccacgaagagctccagataatgaagtaaa |
182 |
Q |
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||||||||||||||||||||||||||| |||||| || || | ||||||||||||||| |||||| || | | | |||| |||| ||||||||||||||| |
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| T |
27935593 |
accatgaaaaccacttacaaagttggagaacttgattagtatcaaagggttgaaatcagatggaatttcatctaggaagcgctctagataatgaagtaaa |
27935494 |
T |
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| Q |
183 |
aagaggccacaatcaaatgagttttcctgctgtggtatctgtcaaggacattcaatcacaacattagtaaaaacacaatgaaatggagaaaatagaaagt |
282 |
Q |
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| T |
27935493 |
aagaggccacaatcaaatttgttttcctgctgtggtacctgtcaaggacattcagtcacaacattagtaaaagcacaatcaaatggagaaaatagaaagt |
27935394 |
T |
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| Q |
283 |
tgttcgatgataactcaattaatcatcagccagagataggcgagaaataaattcaaaaa |
341 |
Q |
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| T |
27935393 |
tgttcgatgataactcaactaatcatcagccagagataggagaggaataaattcaaaaa |
27935335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 226
Target Start/End: Complemental strand, 46163596 - 46163458
Alignment:
| Q |
88 |
gaaaaccacttacaaagttggacaacttggttggtgtaaaagggttgaaatcaaatggaacttgagccacgaagagctccagataatgaagtaaaaagag |
187 |
Q |
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|||||| ||||||||| ||||| ||||||||| | | || || |||||| || ||| ||| ||| | ||||||||| || || || || | |||||| |
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| T |
46163596 |
gaaaacgacttacaaaattggaaaacttggttactttgaatggattgaaagtaagaggagcttcagcaaggaagagctctaggtagtgcagcagaaagag |
46163497 |
T |
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| Q |
188 |
gccacaatcaaatgagttttcctgctgtggtatctgtca |
226 |
Q |
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| T |
46163496 |
gccacaatcatatgagttttcttgctgtggcaactgtca |
46163458 |
T |
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