View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5314-Insertion-6 (Length: 183)

Name: NF5314-Insertion-6
Description: NF5314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5314-Insertion-6
NF5314-Insertion-6
[»] chr7 (13 HSPs)
chr7 (7-183)||(4630302-4630478)
chr7 (5-183)||(4666328-4666506)
chr7 (10-183)||(4661197-4661370)
chr7 (29-183)||(4652913-4653067)
chr7 (43-183)||(4672033-4672173)
chr7 (33-183)||(4643097-4643247)
chr7 (30-173)||(4636260-4636403)
chr7 (29-168)||(4863297-4863436)
chr7 (29-168)||(4784404-4784543)
chr7 (29-168)||(4816833-4816972)
chr7 (29-168)||(4846590-4846729)
chr7 (29-134)||(4697759-4697864)
chr7 (71-168)||(4712677-4712774)
[»] chr4 (1 HSPs)
chr4 (29-183)||(18926308-18926462)


Alignment Details
Target: chr7 (Bit Score: 169; Significance: 7e-91; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 169; E-Value: 7e-91
Query Start/End: Original strand, 7 - 183
Target Start/End: Complemental strand, 4630478 - 4630302
Alignment:
Q  7 agagttattatctctgcagccgcatttgtgtcgctactttacaatcgcggagatcaaagcagccacaaacaactttgacgatgatttcatcatcggagtt 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||    
T  4630478 agagttattatctctgcagccgcatttgtgtcgctactttacaatcgcggagatcaaagcagccacaaacaactttgacaatgatttcatcatcggattt 4630379  T
Q  107 ggagggtttgggaacgtgtacaaaggttgtgtcgatggatccacacctgttgcgataaaacgcctcaaatcaggctc 183  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4630378 ggagggtttgggaacgtgtacaaaggttgtgtcgatggatccacacctgttgcgataaaacgcctcaaatcaggctc 4630302  T

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Target: chr7; HSP #2
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 5 - 183
Target Start/End: Complemental strand, 4666506 - 4666328
Alignment:
Q  5 acagagttattatctctgcagccgcatttgtgtcgctactttacaatcgcggagatcaaagcagccacaaacaactttgacgatgatttcatcatcggag 104  Q
    |||||||| | |||| ||| ||| |||||||| || | ||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  4666506 acagagttgtcatctttgccgccccatttgtgccggtcctttacaattgcagagatcagagcagccacaaacaactttgacgatgatttcatcatcggag 4666407  T
Q  105 ttggagggtttgggaacgtgtacaaaggttgtgtcgatggatccacacctgttgcgataaaacgcctcaaatcaggctc 183  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||    
T  4666406 ttggagggtttggcaacgtgtacaaaggttgtgtcgatggatccacacttgttgccataaaacgcctcaaatcaggctc 4666328  T

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Target: chr7; HSP #3
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 10 - 183
Target Start/End: Complemental strand, 4661370 - 4661197
Alignment:
Q  10 gttattatctctgcagccgcatttgtgtcgctactttacaatcgcggagatcaaagcagccacaaacaactttgacgatgatttcatcatcggagttgga 109  Q
    ||||| |||| ||| ||| |||||||| |||||||||||||| || ||||||| |||||||||||| |||||||| |||||||||||||| |||||||||    
T  4661370 gttatcatctttgccgccccatttgtgccgctactttacaattgcagagatcagagcagccacaaaaaactttgatgatgatttcatcattggagttgga 4661271  T
Q  110 gggtttgggaacgtgtacaaaggttgtgtcgatggatccacacctgttgcgataaaacgcctcaaatcaggctc 183  Q
    |||||||| |||||||||||||||||||| |||||||| |||| ||||||||| |||||||||||||| |||||    
T  4661270 gggtttggcaacgtgtacaaaggttgtgttgatggatcaacacttgttgcgattaaacgcctcaaatcgggctc 4661197  T

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Target: chr7; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 29 - 183
Target Start/End: Complemental strand, 4653067 - 4652913
Alignment:
Q  29 catttgtgtcgctactttacaatcgcggagatcaaagcagccacaaacaactttgacgatgatttcatcatcggagttggagggtttgggaacgtgtaca 128  Q
    ||||||||||||| ||| |||||||| |||||||||||||||||||| ||||| || |||| |||||||||||| |||||||| ||||| ||||||||||    
T  4653067 catttgtgtcgctccttcacaatcgcagagatcaaagcagccacaaataacttcgatgatgttttcatcatcggtgttggaggatttggcaacgtgtaca 4652968  T
Q  129 aaggttgtgtcgatggatccacacctgttgcgataaaacgcctcaaatcaggctc 183  Q
    |||||||  ||||||||||||  |||||||||||||||||||||||||| |||||    
T  4652967 aaggttgcatcgatggatccatgcctgttgcgataaaacgcctcaaatctggctc 4652913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 43 - 183
Target Start/End: Complemental strand, 4672173 - 4672033
Alignment:
Q  43 ctttacaatcgcggagatcaaagcagccacaaacaactttgacgatgatttcatcatcggagttggagggtttgggaacgtgtacaaaggttgtgtcgat 142  Q
    |||||||||||| |||||||||||||||||||||||||| || |||| ||  ||||||||||||||||||||||| ||| ||||||||||||||||||||    
T  4672173 ctttacaatcgcagagatcaaagcagccacaaacaacttcgatgatgcttctatcatcggagttggagggtttggaaacctgtacaaaggttgtgtcgat 4672074  T
Q  143 ggatccacacctgttgcgataaaacgcctcaaatcaggctc 183  Q
    |||||||||| |||||| |||||||| |||||||| |||||    
T  4672073 ggatccacacttgttgccataaaacggctcaaatcgggctc 4672033  T

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Target: chr7; HSP #6
Raw Score: 91; E-Value: 2e-44
Query Start/End: Original strand, 33 - 183
Target Start/End: Complemental strand, 4643247 - 4643097
Alignment:
Q  33 tgtgtcgctactttacaatcgcggagatcaaagcagccacaaacaactttgacgatgatttcatcatcggagttggagggtttgggaacgtgtacaaagg 132  Q
    |||| |||| |||||||||||| |||||||||||||| ||||||||||| || |||| ||| ||||||||||||||||||||||| ||||||||||||||    
T  4643247 tgtgccgctcctttacaatcgcagagatcaaagcagctacaaacaacttcgatgatgcttttatcatcggagttggagggtttggcaacgtgtacaaagg 4643148  T
Q  133 ttgtgtcgatggatccacacctgttgcgataaaacgcctcaaatcaggctc 183  Q
    |||||| ||||||||||||| ||||||| | || ||||||||||| |||||    
T  4643147 ttgtgttgatggatccacacttgttgcggttaagcgcctcaaatcgggctc 4643097  T

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Target: chr7; HSP #7
Raw Score: 72; E-Value: 5e-33
Query Start/End: Original strand, 30 - 173
Target Start/End: Complemental strand, 4636403 - 4636260
Alignment:
Q  30 atttgtgtcgctactttacaatcgcggagatcaaagcagccacaaacaactttgacgatgatttcatcatcggagttggagggtttgggaacgtgtacaa 129  Q
    ||||||| ||||||||||||||||| ||||||| |||||||||||| ||||| || |||||   ||| ||||| ||||| ||||||||||| ||||||||    
T  4636403 atttgtgccgctactttacaatcgcagagatcagagcagccacaaaaaacttcgatgatgaaaacattatcggtgttggggggtttgggaatgtgtacaa 4636304  T
Q  130 aggttgtgtcgatggatccacacctgttgcgataaaacgcctca 173  Q
    |||||   | |||||||||||||| |||||||||||||||||||    
T  4636303 aggtttcattgatggatccacacccgttgcgataaaacgcctca 4636260  T

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Target: chr7; HSP #8
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 29 - 168
Target Start/End: Complemental strand, 4863436 - 4863297
Alignment:
Q  29 catttgtgtcgctactttacaatcgcggagatcaaagcagccacaaacaactttgacgatgatttcatcatcggagttggagggtttgggaacgtgtaca 128  Q
    |||||||| ||||| ||||||||  | ||||| | ||| || ||||||||||||||||||  ||||||||| |||||||||||||| || ||||||||||    
T  4863436 catttgtgccgctattttacaataacagagataagagctgctacaaacaactttgacgatattttcatcattggagttggagggttcggcaacgtgtaca 4863337  T
Q  129 aaggttgtgtcgatggatccacacctgttgcgataaaacg 168  Q
    |||||| | | ||||||  || ||||||||||||||||||    
T  4863336 aaggttatattgatggagacatacctgttgcgataaaacg 4863297  T

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Target: chr7; HSP #9
Raw Score: 52; E-Value: 4e-21
Query Start/End: Original strand, 29 - 168
Target Start/End: Original strand, 4784404 - 4784543
Alignment:
Q  29 catttgtgtcgctactttacaatcgcggagatcaaagcagccacaaacaactttgacgatgatttcatcatcggagttggagggtttgggaacgtgtaca 128  Q
    |||||||| ||||| |||||||| ||||| || |||||||| ||||||||||| || |||  ||| |||||||| ||||||||||| || || |||||||    
T  4784404 catttgtgccgctattttacaatagcggaaataaaagcagctacaaacaacttcgaagatatttttatcatcggggttggagggttcggcaatgtgtaca 4784503  T
Q  129 aaggttgtgtcgatggatccacacctgttgcgataaaacg 168  Q
    |||||| | | ||||||   ||||| ||||||||||||||    
T  4784504 aaggttatattgatggagttacaccagttgcgataaaacg 4784543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 52; E-Value: 4e-21
Query Start/End: Original strand, 29 - 168
Target Start/End: Original strand, 4816833 - 4816972
Alignment:
Q  29 catttgtgtcgctactttacaatcgcggagatcaaagcagccacaaacaactttgacgatgatttcatcatcggagttggagggtttgggaacgtgtaca 128  Q
    |||||||| ||||| |||||||| ||||| || |||||||| ||||||||||| || |||  ||| |||||||| ||||||||||| || || |||||||    
T  4816833 catttgtgccgctattttacaatagcggaaataaaagcagctacaaacaacttcgaagatatttttatcatcggggttggagggttcggcaatgtgtaca 4816932  T
Q  129 aaggttgtgtcgatggatccacacctgttgcgataaaacg 168  Q
    |||||| | | ||||||   ||||| ||||||||||||||    
T  4816933 aaggttatattgatggagttacaccagttgcgataaaacg 4816972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 52; E-Value: 4e-21
Query Start/End: Original strand, 29 - 168
Target Start/End: Original strand, 4846590 - 4846729
Alignment:
Q  29 catttgtgtcgctactttacaatcgcggagatcaaagcagccacaaacaactttgacgatgatttcatcatcggagttggagggtttgggaacgtgtaca 128  Q
    |||||||| ||||| |||||||| |||||||| | || ||| ||||||||||| || |||  ||| ||||| |||| ||||||||| || ||||||||||    
T  4846590 catttgtgccgctattttacaatagcggagataagagaagctacaaacaacttcgaagatatttttatcattggagctggagggttcggcaacgtgtaca 4846689  T
Q  129 aaggttgtgtcgatggatccacacctgttgcgataaaacg 168  Q
    ||||||   || |||||  |||||||||||||||||||||    
T  4846690 aaggttacatcaatggactcacacctgttgcgataaaacg 4846729  T

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Target: chr7; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 29 - 134
Target Start/End: Original strand, 4697759 - 4697864
Alignment:
Q  29 catttgtgtcgctactttacaatcgcggagatcaaagcagccacaaacaactttgacgatgatttcatcatcggagttggagggtttgggaacgtgtaca 128  Q
    |||||||| ||||| |||||||| |||||||| | ||| || ||||||||||| || |||  ||| ||||| ||||||||||||||||| ||||||| ||    
T  4697759 catttgtgccgctattttacaatagcggagataagagccgctacaaacaacttcgaagatatttttatcattggagttggagggtttggtaacgtgttca 4697858  T
Q  129 aaggtt 134  Q
    ||||||    
T  4697859 aaggtt 4697864  T

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Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 71 - 168
Target Start/End: Original strand, 4712677 - 4712774
Alignment:
Q  71 acaaacaactttgacgatgatttcatcatcggagttggagggtttgggaacgtgtacaaaggttgtgtcgatggatccacacctgttgcgataaaacg 168  Q
    ||||||||||| || |||  ||| |||||||| |||||||| || || ||||||||||||||||   | ||||||  || ||||||||||||||||||    
T  4712677 acaaacaacttcgaagatatttttatcatcggggttggaggattcggcaacgtgtacaaaggttacattgatggactcatacctgttgcgataaaacg 4712774  T

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Target: chr4 (Bit Score: 83; Significance: 1e-39; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 1e-39
Query Start/End: Original strand, 29 - 183
Target Start/End: Original strand, 18926308 - 18926462
Alignment:
Q  29 catttgtgtcgctactttacaatcgcggagatcaaagcagccacaaacaactttgacgatgatttcatcatcggagttggagggtttgggaacgtgtaca 128  Q
    |||||||| |||||||||||||| || ||||| |||||||||||||| |||||||| |||||||| ||||||||||||||||||||||| |||||||| |    
T  18926308 catttgtgccgctactttacaattgcagagataaaagcagccacaaataactttgatgatgatttaatcatcggagttggagggtttggcaacgtgtata 18926407  T
Q  129 aaggttgtgtcgatggatccacacctgttgcgataaaacgcctcaaatcaggctc 183  Q
    ||||||   |||||  ||||||||| ||||| |||||||| |||||| |||||||    
T  18926408 aaggtttcatcgataaatccacacccgttgcaataaaacgtctcaaaccaggctc 18926462  T

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