View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5314_high_11 (Length: 272)
Name: NF5314_high_11
Description: NF5314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5314_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 154; Significance: 9e-82; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 17 - 190
Target Start/End: Original strand, 34349685 - 34349858
Alignment:
| Q |
17 |
acttataagttagaaactaatacttatttgagttaacctaattggttggacactcaagtggttaatgaacttcagttaagttcgaattgatcagaaacgc |
116 |
Q |
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| T |
34349685 |
acttataagttagaaactaatacatatttgagttaacctaattggttggacactcaagtggttaatgaactacacttaagttcgaattgatcagaaatgc |
34349784 |
T |
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| Q |
117 |
ctgagtttaatttctgtctgaaacaatcatgggttagatagtacttacctccttgccaaacttcaaattagtag |
190 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
34349785 |
ctgagtttaatttctgtctgaaacaatcatgggttagattgtacttacctccttgccaaacttcaaattagtag |
34349858 |
T |
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