View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5314_high_12 (Length: 270)
Name: NF5314_high_12
Description: NF5314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5314_high_12 |
 | |
|
| [»] scaffold0082 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 254; Significance: 1e-141; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 38608307 - 38608560
Alignment:
| Q |
1 |
ctcctccgtgaacacatcgttccaggtttattcactatcgagtatttgcgtacgcttccttttggcaccaagatcgagacgctcagtccaggccgttgca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38608307 |
ctcctccgtgaacacatcgttccaggtttattcactatcgagtatttgcgtacgcttccttttggcaccaagatcgagacgctcagtccaggccgttgca |
38608406 |
T |
|
| Q |
101 |
taaccgtcacttccgattcgattcattcgaacattactaccggcggtgctccaaaagttttcatcggaggcgttgagattgctcaaccggatctattcaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38608407 |
taaccgtcacttccgattcgattcattcgaacattactaccggcggtgctccaaaagttttcatcggaggcgttgagattgctcaaccggatctattcaa |
38608506 |
T |
|
| Q |
201 |
caacggaatggttgttgttcacggccttcaaggtttcgtctctacactttctcc |
254 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38608507 |
caacggaatggttgttgttcacggccttcaaggtttcgtctctacactttctcc |
38608560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 38793090 - 38793343
Alignment:
| Q |
1 |
ctcctccgtgaacacatcgttccaggtttattcactatcgagtatttgcgtacgcttccttttggcaccaagatcgagacgctcagtccaggccgttgca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38793090 |
ctcctccgtgaacacatcgttccaggtttattcactatcgagtatttgcgtacgcttccttttggcaccaagatcgagacgctcagtccaggccgttgca |
38793189 |
T |
|
| Q |
101 |
taaccgtcacttccgattcgattcattcgaacattactaccggcggtgctccaaaagttttcatcggaggcgttgagattgctcaaccggatctattcaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38793190 |
taaccgtcacttccgattcgattcattcgaacattactaccggcggtgctccaaaagttttcatcggaggcgttgagattgctcaaccggatctattcaa |
38793289 |
T |
|
| Q |
201 |
caacggaatggttgttgttcacggccttcaaggtttcgtctctacactttctcc |
254 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38793290 |
caacggaatggttgttgttcacggccttcaaggtttcgtctctacactttctcc |
38793343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 38121816 - 38121563
Alignment:
| Q |
1 |
ctcctccgtgaacacatcgttccaggtttattcactatcgagtatttgcgtacgcttccttttggcaccaagatcgagacgctcagtccaggccgttgca |
100 |
Q |
| |
|
||||| ||||||||||| ||||||||| ||||||| ||||| ||| | || ||| |||||||||||||||| ||||| |||||||| ||||||||| |
|
|
| T |
38121816 |
ctccttcgtgaacacatagttccaggtatattcaccatcgaatatcttcggcgacttgcttttggcaccaagattgagactctcagtcccggccgttgcg |
38121717 |
T |
|
| Q |
101 |
taaccgtcacttccgattcgattcattcgaacattactaccggcggtgctccaaaagttttcatcggaggcgttgagattgctcaaccggatctattcaa |
200 |
Q |
| |
|
|||||||||||||||| ||||||||| ||||| ||| ||||| ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
38121716 |
taaccgtcacttccgagtcgattcatcagaacaacacttccggcagtgctccaaaagtcttcatcggaggcgttgagattactcaaccggatctattcaa |
38121617 |
T |
|
| Q |
201 |
caacggaatggttgttgttcacggccttcaaggtttcgtctctacactttctcc |
254 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
38121616 |
caacggaatggttgttgttcacggccttcaaggtttcgcctctaagctttctcc |
38121563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 158; Significance: 4e-84; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 28731390 - 28731137
Alignment:
| Q |
1 |
ctcctccgtgaacacatcgttccaggtttattcactatcgagtatttgcgtacgcttccttttggcaccaagatcgagacgctcagtccaggccgttgca |
100 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| ||||| ||| | || ||| |||||||||||||||||||||| |||||||| ||||||||| |
|
|
| T |
28731390 |
ctcctccgtgaacacatcgttccaggtatattcaccatcgaatatctccggcgtcttgcttttggcaccaagatcgagactctcagtcccggccgttgcg |
28731291 |
T |
|
| Q |
101 |
taaccgtcacttccgattcgattcattcgaacattactaccggcggtgctccaaaagttttcatcggaggcgttgagattgctcaaccggatctattcaa |
200 |
Q |
| |
|
|||| ||||||||||| ||||||||| |||||| ||| ||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
28731290 |
taactgtcacttccgagtcgattcatccgaacagcacttccggcggtgctccaaaagtattcatcggaggcgttgagattactcaaccagatctattcaa |
28731191 |
T |
|
| Q |
201 |
caacggaatggttgttgttcacggccttcaaggtttcgtctctacactttctcc |
254 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||| |||||||| |
|
|
| T |
28731190 |
caacggaatggttgttgttcacggccttcaaggtttcgcctctacgctttctcc |
28731137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 34875876 - 34876008
Alignment:
| Q |
1 |
ctcctccgtgaacacatcgttccaggtttattcactatcgagtatttgcgtacgcttccttttggcaccaagatcgagacgctcagtccaggccgttgca |
100 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| ||||| ||| | || ||| |||||||||||||||||||||| |||||||| ||||||||| |
|
|
| T |
34875876 |
ctcctccgtgaacacatcgttccaggtatattcaccatcgaatatctccggcgacttgcttttggcaccaagatcgagactctcagtcccggccgttgcg |
34875975 |
T |
|
| Q |
101 |
taaccgtcacttccgattcgattcattcgaaca |
133 |
Q |
| |
|
||||| |||||||||| ||||||||| |||||| |
|
|
| T |
34875976 |
taaccatcacttccgagtcgattcatccgaaca |
34876008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 69; Significance: 5e-31; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 31529344 - 31529212
Alignment:
| Q |
1 |
ctcctccgtgaacacatcgttccaggtttattcactatcgagtatttgcgtacgcttccttttggcaccaagatcgagacgctcagtccaggccgttgca |
100 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| ||||| ||| | || ||| |||||||||||||||| ||||| |||||||| ||||||||| |
|
|
| T |
31529344 |
ctcctccgtgaacacatcgttccaggtatattcaccatcgaatatctccggcgacttgcttttggcaccaagattgagactctcagtcccggccgttgcg |
31529245 |
T |
|
| Q |
101 |
taaccgtcacttccgattcgattcattcgaaca |
133 |
Q |
| |
|
|||||||||||||||| ||||||||| |||||| |
|
|
| T |
31529244 |
taaccgtcacttccgagtcgattcatccgaaca |
31529212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 51801412 - 51801280
Alignment:
| Q |
1 |
ctcctccgtgaacacatcgttccaggtttattcactatcgagtatttgcgtacgcttccttttggcaccaagatcgagacgctcagtccaggccgttgca |
100 |
Q |
| |
|
||||||||||||||||||||||||| | ||||||| ||| | || | || ||| |||||||||||||||||||||| |||||||| ||||||||| |
|
|
| T |
51801412 |
ctcctccgtgaacacatcgttccagatatattcaccatcaaatacctccggcgacttgcttttggcaccaagatcgagactctcagtcccggccgttgcg |
51801313 |
T |
|
| Q |
101 |
taaccgtcacttccgattcgattcattcgaaca |
133 |
Q |
| |
|
||| |||||||||||||||||||||| |||||| |
|
|
| T |
51801312 |
taatcgtcacttccgattcgattcatccgaaca |
51801280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0082 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0082
Description:
Target: scaffold0082; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 184 - 243
Target Start/End: Complemental strand, 34165 - 34106
Alignment:
| Q |
184 |
caaccggatctattcaacaacggaatggttgttgttcacggccttcaaggtttcgtctct |
243 |
Q |
| |
|
||||| ||||| ||||||||||| ||||| ||| |||| ||||||||||||||| ||||| |
|
|
| T |
34165 |
caacctgatctcttcaacaacggcatggtggttattcatggccttcaaggtttcatctct |
34106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University