View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5314_high_18 (Length: 216)
Name: NF5314_high_18
Description: NF5314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5314_high_18 |
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Alignment Details
Target: chr2 (Bit Score: 97; Significance: 8e-48; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 40 - 188
Target Start/End: Original strand, 28647879 - 28648027
Alignment:
| Q |
40 |
tgtgttctaaaaacggatgcaattgaaattcttgggcctgcatggtttgctaaaactc--tgttgaacacttgtgaacttgtcattactcacaagctgta |
137 |
Q |
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| T |
28647879 |
tgtgttctaaaaaaggttgcaactgaaattcttgggcctgcatggtttgctaaaactctgtgttgaacacttctgtacttgtcattactcacaagctgta |
28647978 |
T |
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| Q |
138 |
aaaagaaaaattaaaattgatcatagtcaatattcaatttttatttgacat |
188 |
Q |
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| T |
28647979 |
aaaagaaaa--ttaaattgatcatagtcagcattcaatttttatttgacat |
28648027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 40 - 176
Target Start/End: Original strand, 28669984 - 28670122
Alignment:
| Q |
40 |
tgtgttctaaaaacggatgcaattgaaattcttgggcctgcatggtttgctaaaactctgt--tgaacacttgtgaacttgtcattactcacaagctgta |
137 |
Q |
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| T |
28669984 |
tgtgttctaaaaaaggttgcaactgaaattcttgggcctgcatggtttgctaaaactctgtgttgaacacttgtgaacttgtcattactcacaagctgga |
28670083 |
T |
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| Q |
138 |
aaaagaaaaattaaaattgatcatagtcaatattcaatt |
176 |
Q |
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| T |
28670084 |
gaaagaaaaattaatattgatcatagtcaaaaatcaatt |
28670122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 37 - 188
Target Start/End: Original strand, 28673045 - 28673200
Alignment:
| Q |
37 |
tcatgtgttctaaaaacggatgcaattgaaattcttgggcctgcatggtttgctaaaactctgt--tgaacacttgtgaacttgtcattactcacaagct |
134 |
Q |
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| T |
28673045 |
tcatgtgctctaaaaagggatgcgattgaaattcttgggccagcatgttttgctaaaactctgtgttgaacacttgtgaacttatcattactcacaatct |
28673144 |
T |
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| Q |
135 |
gtaaaaagaaaaat--taaaattgatcatagtcaatattcaatttttatttgacat |
188 |
Q |
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| T |
28673145 |
gtagaaagaaaaaaagtgaaaccgatcatagtcaatattcaatttttatatgacat |
28673200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 40 - 188
Target Start/End: Original strand, 28639137 - 28639285
Alignment:
| Q |
40 |
tgtgttctaaaaacggatgcaattgaaattcttgggcctgcatggtttgctaaaactc--tgttgaacacttgtgaacttgtcattactcacaagctgta |
137 |
Q |
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||||||||||| | || ||||| |||||||||||| |||||||| ||||||||||||| |||||||||||| | ||||||||||||||||||||||| | |
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| T |
28639137 |
tgtgttctaaagagggttgcaactgaaattcttggacctgcatgttttgctaaaactctgtgttgaacacttttaaacttgtcattactcacaagctgca |
28639236 |
T |
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| Q |
138 |
aaaagaaaaattaaaattgatcatagtcaatattcaatttttatttgacat |
188 |
Q |
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|||||||| | |||||| ||||||||| |||||||||||||||||||| |
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| T |
28639237 |
gaaagaaaa--ttaaattgttcatagtcagcattcaatttttatttgacat |
28639285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 135
Target Start/End: Original strand, 28690052 - 28690153
Alignment:
| Q |
36 |
atcatgtgttctaaaaacggatgcaattgaaattcttgggcctgcatggtttgctaaaactc--tgttgaacacttgtgaacttgtcattactcacaagc |
133 |
Q |
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||||| ||||||||| | ||||| | |||||||||||| ||| ||| ||||||||||||| |||||||| || |||||||||||||| | |||||| |
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| T |
28690052 |
atcatctgttctaaacaatgatgctactgaaattcttggacctatatgctttgctaaaactctgtgttgaacgctaatgaacttgtcattagttacaagc |
28690151 |
T |
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| Q |
134 |
tg |
135 |
Q |
| |
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|| |
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| T |
28690152 |
tg |
28690153 |
T |
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