View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5314_low_1 (Length: 725)
Name: NF5314_low_1
Description: NF5314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5314_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 553; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 553; E-Value: 0
Query Start/End: Original strand, 57 - 708
Target Start/End: Original strand, 41455999 - 41456644
Alignment:
| Q |
57 |
attacatccaacggaacatnnnnnnntgactgaaatacattaactaaatgtatagtttctcatcgactagaattatttccagtcaattagacaatgaatc |
156 |
Q |
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| T |
41455999 |
attacatccaacggaacataaaaaaaagactgaaatacattaactaaatgtatagtttctcatcgactagaattaattccagtcaattagacaatgaatc |
41456098 |
T |
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| Q |
157 |
acttatttagccaccgtgaataacaccttagcgnnnnnnnnttcaagaggtgttatattttttcttggaagaagttgaaaatttaaagaaaaagagaaca |
256 |
Q |
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| T |
41456099 |
acttatttagccaccgtgaataacaccttagcgaaaaaaa-ttcaagaggtgttatatttt-tcttggaagaagttgaaaatttaaagaaaaagagaaca |
41456196 |
T |
|
| Q |
257 |
cgtggtctgaaaattaatcttattatatcactaataccgtagtagtagttagttacaaatcatgatagattgatagtgaagattatttatgatgataatg |
356 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
41456197 |
cggggtctgaaaattaatcttattatatcactaataccgtagtagtagttagttacaaatcatgatagattgatagtgaagattatttatgatgatcatg |
41456296 |
T |
|
| Q |
357 |
aatatacatagttgcaaattaagacaaattaatcactccataattaacggtagaaactgagttgttttcaacctgattggcagcgcatggaagagtctac |
456 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41456297 |
aatatacatagttgcaaattaagacaaattaatcactccataattaacggtagaaactgagttgttttcaacctgattggcagcgcatggaagagtctac |
41456396 |
T |
|
| Q |
457 |
acagaaaaatgatcgtatacattccattaccaacacgcaccaatatatatggccaatattgaaccaccacgtaccatgcatccatgttgattattcaagc |
556 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41456397 |
acagaaaaatgatcgtatacattccattaccaacacgcacca----atatggccaatattgaaccaccacgtaccatgcatccatgttgattattcaagc |
41456492 |
T |
|
| Q |
557 |
tatgcagcctataaataccatcacacatttgaacgagaaatcgcatcatacacaaaacaaaattaatacctcactcacaaccattcatcaaattaagaaa |
656 |
Q |
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| T |
41456493 |
tatgcagcctataaataccatcacacatttgaacgagaaatcgcatcatacacaaaacaaaattaatacctcactcacaaccattcatcaaattaagaaa |
41456592 |
T |
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| Q |
657 |
accagctatatgaatcccataatgaatacccaatttgctctttgtattattt |
708 |
Q |
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| T |
41456593 |
accagctatatgaatcctataatgaatacccaatttgctctttgcattattt |
41456644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 61
Target Start/End: Original strand, 41451642 - 41451679
Alignment:
| Q |
24 |
agtatagttaaaaggagaagaacaaatcaaaacattac |
61 |
Q |
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|||| ||||||||||||||||||||||||||||||||| |
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| T |
41451642 |
agtacagttaaaaggagaagaacaaatcaaaacattac |
41451679 |
T |
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