View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5314_low_13 (Length: 250)
Name: NF5314_low_13
Description: NF5314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5314_low_13 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 6 - 250
Target Start/End: Complemental strand, 45529009 - 45528776
Alignment:
| Q |
6 |
gtgagatgaaaaacaaacagatcttnnnnnnntacttaattcaccttcaatttgtggttggaaaacaataaaaaacaaagtgatgagtttcttgcaggga |
105 |
Q |
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| T |
45529009 |
gtgagatgaaaaacaaacagatcttaaaaaaatacttaattcaccttcaatttgtggttggaaaacaataaaaaacaaagtgatgagtttcttgcaggga |
45528910 |
T |
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| Q |
106 |
atggattcctttaaatttgttttctctcctcaatttatccaccactgttcttcttctcaaatcaattcgtcaatggaaaagcttctctaatggaactgtt |
205 |
Q |
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| T |
45528909 |
atcgattcctttaaatttgttttctctcctcaatttatccaccactgttcttcttctcaaatcaattcgtcaatggaaaagcttctctaatggaactgtt |
45528810 |
T |
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| Q |
206 |
atttccttcaaattaattccttcaaagctaattgaattcgtgttc |
250 |
Q |
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| T |
45528809 |
-----------attaattccttcaaagctaattgaattcgtgttc |
45528776 |
T |
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Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 109 - 166
Target Start/End: Complemental strand, 13390401 - 13390344
Alignment:
| Q |
109 |
gattcctttaaatttgttttctctcctcaatttatccaccactgttcttcttctcaaa |
166 |
Q |
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| T |
13390401 |
gattcctttaaatatgttttctctcctcaatttatcgatcacggttcttcttctcaaa |
13390344 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 109 - 162
Target Start/End: Complemental strand, 13398503 - 13398450
Alignment:
| Q |
109 |
gattcctttaaatttgttttctctcctcaatttatccaccactgttcttcttct |
162 |
Q |
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| T |
13398503 |
gattcctttaaatatgttttctctcctcaatttatcgatcacggttgttcttct |
13398450 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 91
Target Start/End: Complemental strand, 13393126 - 13393091
Alignment:
| Q |
56 |
tttgtggttggaaaacaataaaaaacaaagtgatga |
91 |
Q |
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| T |
13393126 |
tttgtggttggaaaaaaataaaaaacaaagtgatga |
13393091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 91
Target Start/End: Complemental strand, 13396265 - 13396230
Alignment:
| Q |
56 |
tttgtggttggaaaacaataaaaaacaaagtgatga |
91 |
Q |
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| T |
13396265 |
tttgtggttggaaaaaaataaaaaacaaagtgatga |
13396230 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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