View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5314_low_16 (Length: 243)
Name: NF5314_low_16
Description: NF5314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5314_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 114; Significance: 6e-58; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 45528784 - 45528663
Alignment:
| Q |
1 |
ttcgtgttcttcctctccatcggcgtccctgtcgccgccgtcaggttttccggtgtcgttgttctcgtcggaaccagtaaacttcacatgagagatgtgg |
100 |
Q |
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| T |
45528784 |
ttcgtgttcttcctctccatcggcgtccccgtcgccgccgtcaggttttccggtgtcgttgttctcgtcggaaccagtaaacttcacctgagagatgtgg |
45528685 |
T |
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| Q |
101 |
ttgccggaataaagatggccgc |
122 |
Q |
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| T |
45528684 |
ttgccggaataaagatggccgc |
45528663 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 149 - 225
Target Start/End: Complemental strand, 45528633 - 45528557
Alignment:
| Q |
149 |
gaactccgatagtgtaaagagaacaacgacggtgagagagaaaggaactctgatggtgggagaaatgttgattgagt |
225 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45528633 |
gaactccgatagtgtaaagagaacaacgacggtgagagagaaaggaactctgatggtgggagaaatgttgattgagt |
45528557 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 5 - 99
Target Start/End: Complemental strand, 13398355 - 13398261
Alignment:
| Q |
5 |
tgttcttcctctccatcggcgtccctgtcgccgccgtcaggttttccggtgtcgttgttctcgtcggaaccagtaaacttcacatgagagatgtg |
99 |
Q |
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| T |
13398355 |
tgttcttcttccccatcggtgtccccatcaccgccgtcaggtattccggcgtcgttgttctcgtcggaaccattaaacttcacctgagagatgtg |
13398261 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 75
Target Start/End: Complemental strand, 98337 - 98294
Alignment:
| Q |
32 |
tcgccgccgtcaggttttccggtgtcgttgttctcgtcggaacc |
75 |
Q |
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|||||||||||| ||||||||| ||||||||||||| ||||||| |
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| T |
98337 |
tcgccgccgtcacgttttccggcgtcgttgttctcgccggaacc |
98294 |
T |
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