View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5314_low_2 (Length: 453)
Name: NF5314_low_2
Description: NF5314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5314_low_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 20 - 443
Target Start/End: Complemental strand, 40312145 - 40311721
Alignment:
| Q |
20 |
aaccgacccttttaacttaagtgcttcttcttcctctatggagcttgaggaagaagaaagagaaagatggtatgaagaaaactgaagttttgaactagtt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40312145 |
aaccgacccttttaacttaagtgcttcttcttcctctatggagcttgaggaagaagaaagagaaagatggtatgaagaaaactgaagttttgaactagtt |
40312046 |
T |
|
| Q |
120 |
agtactataagaagaaaacaatgaatgaagaaagaaaccctaagctaagcttgttcaagaacatnnnnnnnnnnnnnnnnnnnntgagttcaaaaaacat |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| | |
|
|
| T |
40312045 |
agtactataagaagaaaacaatgaatgaagaaaggaaccctaagctaagcttgttcaagaacatcaacaacaacaacaaacaactgagttcaaaaaactt |
40311946 |
T |
|
| Q |
220 |
gaagagagagaaagatgagacagtgatctgagctgaaacagtgggaataaagtcagggannnnnnnnnnnnnnnnnnntttgtattgcacgcatatcgat |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
40311945 |
gaagagagagaaagatgagacagtgatctgagctgaaacagtgggaataaagtcagggaagagagagaagagagagagtttgtattgcacgcatatcgat |
40311846 |
T |
|
| Q |
320 |
ttctcaaaacagagctttcttttttagttcaattcatttacgtaattgtccttgttgtttgtttctaatgacatg-ttacatagccctacactactcatg |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
40311845 |
ttctcaaaacagagctttcttttttagttcaattcatttacgtaattgtccttgttgtttgtttctaatgacatgtttacatagccctacactactcatg |
40311746 |
T |
|
| Q |
419 |
tcattttcaacgttcaccacctttg |
443 |
Q |
| |
|
||||||||||| ||||||||||||| |
|
|
| T |
40311745 |
tcattttcaacattcaccacctttg |
40311721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University