View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5314_low_3 (Length: 399)
Name: NF5314_low_3
Description: NF5314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5314_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 6 - 392
Target Start/End: Complemental strand, 1492645 - 1492259
Alignment:
| Q |
6 |
agaacaaactttcttttctttgtttggtctttaaacttggcaaaagggtcatctgagaagaaagtttcattgaaattgtgtttgaaatcttggaaaagtg |
105 |
Q |
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| T |
1492645 |
agaacaaactttcttttctttgtttggtctttaaacttggcaaaagggtcatctgagaagaaagtttcattgaaactgtgtttgaaatcttggaaaagtg |
1492546 |
T |
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| Q |
106 |
tctgcttaggaggacttgaaactttgtgcatatctggaagaatagcaccaccgtgtctacgtgatgaaggattgctctttatttcttccatggcccttga |
205 |
Q |
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||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
1492545 |
tctgcttaggaggacctgaaactttgtgcatatgtggaagaatagcaccaccgtgtccacgtgatgaaggattgctctttatttcttccatggcccttga |
1492446 |
T |
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| Q |
206 |
cacagcatcatcactaaaaacttgactcattttaataacctgcaaaaaaccatacactaatcagcaaaaattcagaaacaaaaagtagcttttgtaattt |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1492445 |
cacagcatcatcactaaaaacttgactcattttaataacctgcaaaaaaccatacactaatcagcaaaaattcagaaacaaaaagtagcttttgtaattt |
1492346 |
T |
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| Q |
306 |
agcatgaaagtctatttttcttagtcaactgatagctgcataatcacatgttgtcatgtgtaggttagcttaatttaagagaataat |
392 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| || |||||||||||||| |||||||| |
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| T |
1492345 |
agcatgaaagtctatttttcttagtcaactgatagctgcataattacattttgtcatgtgaagtttagcttaatttaacagaataat |
1492259 |
T |
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