View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5314_low_7 (Length: 341)
Name: NF5314_low_7
Description: NF5314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5314_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 11 - 323
Target Start/End: Original strand, 2560333 - 2560634
Alignment:
| Q |
11 |
ttggagttttttcatgcagggttaattgttggttttttctatattacctataaaaaattgagcttttattaccagggtcaatgatagtttatggatgtca |
110 |
Q |
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| T |
2560333 |
ttggagttttttcatgcagggttaattgttggttttttctatattacctataaaaaattgagcttttattaccagggtcaatgatagtttatggatgtca |
2560432 |
T |
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| Q |
111 |
cttgaaaatgtacttaagtgtccggtgtttattggtcggagaaattacctactattttttcatggataacctagatgtcaccttaatcgtttaaagatta |
210 |
Q |
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| T |
2560433 |
cttgaaaatgtacttaagtgtccgatgtttattggtcggataaattatctactattttttcatggataatctagatgtcactttaa-------------- |
2560518 |
T |
|
| Q |
211 |
gaagctatgcgtaacctt---aaatgttatagaaaaactattttggagag-tttgctcaaattgtatcttgactactgagattctcaagttattaattga |
306 |
Q |
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| T |
2560519 |
-aatctatgcgtaaccttaaaaaatgttatagaaaaactattttggagagttttgctcgaattgtatcttgactactgagattctcaagttattaattga |
2560617 |
T |
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| Q |
307 |
acttcaaataatgaagt |
323 |
Q |
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| T |
2560618 |
acttcaaataatgaagt |
2560634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 136 - 195
Target Start/End: Complemental strand, 33896900 - 33896840
Alignment:
| Q |
136 |
tgtttattggtcggag-aaattacctactattttttcatggataacctagatgtcacctta |
195 |
Q |
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| T |
33896900 |
tgtttattggttggagtaaattacccaccattttttcatgggtaccctagttgtcacctta |
33896840 |
T |
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