View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5314_low_8 (Length: 332)

Name: NF5314_low_8
Description: NF5314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5314_low_8
NF5314_low_8
[»] chr3 (1 HSPs)
chr3 (21-317)||(46587360-46587656)


Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 21 - 317
Target Start/End: Complemental strand, 46587656 - 46587360
Alignment:
Q  21 tcaaagtgattaaatataattaaatgcgttggtgtcgtgttagtgtcnnnnnnnnnnnnntgttaattgat-atgtgtgatgatacatacccaatgtgtc 119  Q
    |||||||||||||||||||||||||| |||||||| |||||||||||             ||||||||||| || |||||||||||||||||||||||||    
T  46587656 tcaaagtgattaaatataattaaatgtgttggtgttgtgttagtgtcaaaaaacaaaaa-tgttaattgattatttgtgatgatacatacccaatgtgtc 46587558  T
Q  120 atttatttggaaggggctatttttgatggcccattgagtgtagttagtgcctgcacgccaaccttcagagtctccaaccaagatgcttcttttggttccg 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  46587557 atttatttggaaggggctatttttgatggcccattgagtgtagttagtgcctgcacgccaaccttcagagtctccaaccaagatgcttcttttggttctg 46587458  T
Q  220 gccttgcttcctgaccctgcaaccattgaagcaatcacaaggaagataactccttggattaaaattctagccatatgtttatgcatctttaattaatt 317  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46587457 gccttgcttcttgaccctgcaaccattgaagcaatcacaaggaagataactccttggattaaaattctagccatatgtttatgcatctttaattaatt 46587360  T

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