View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5315-Insertion-5 (Length: 384)
Name: NF5315-Insertion-5
Description: NF5315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5315-Insertion-5 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 7 - 384
Target Start/End: Original strand, 41314034 - 41314411
Alignment:
| Q |
7 |
aaaaaccatccactaaatgaaggtaagcttccaagtcatgacaacatgccatgtcagcatccggcttcaaaaatggagacatcttcgtatccacacgtag |
106 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41314034 |
aaaaaccatccactaaatgtaggtaagcttccaagtcatgacaacatgccatgtcagcatccggcttcaaaaatggagacatcttcgtatccacacgtag |
41314133 |
T |
|
| Q |
107 |
ctcagatcccacatgagtgtaagccaatgatgttttctcatcaagcatgtcaactacaccaccaaagttaaaacttcktaatttttgttcaaactcttca |
206 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
41314134 |
ctcagatcccacatgagtgtaagccaatggtgttttctcatcaagcatgtcaactacaccaccaaagttaaaacttcttaatttttgttcaaactcttca |
41314233 |
T |
|
| Q |
207 |
ctcaataacattccaggaactctagtaatcacatcttgggaattcactattcccaaaactttcacgttttgggaagtgattttgttcccataagccttgt |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41314234 |
ctcaataacattccaggaactctagtaatcacatcttgggaattcactattctcaaaactttcacgttttgggaagtgattttgttcccataagccttgt |
41314333 |
T |
|
| Q |
307 |
taccaactttgggtccaccaaaggaaaaaacagccacgggtggcacgtttggactacaagtgctgatgtcatcagcta |
384 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
41314334 |
taccaactttgggtccaccaaaggaaaaaacagccacgggtggcacgtttggattacaagtgctgatgtcatcagcta |
41314411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 318 - 358
Target Start/End: Complemental strand, 4167389 - 4167349
Alignment:
| Q |
318 |
ggtccaccaaaggaaaaaacagccacgggtggcacgtttgg |
358 |
Q |
| |
|
||||| ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
4167389 |
ggtccgccaaatgaaaaaacagccacgggtggcacgtttgg |
4167349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 105
Target Start/End: Complemental strand, 4167698 - 4167605
Alignment:
| Q |
12 |
ccatccactaaatgaaggtaagcttccaagtcatgacaacatgccatgtcagcatccggcttcaaaaatggagacatcttcgtatccacacgta |
105 |
Q |
| |
|
|||||||||||||| | ||||| || | ||||||||||| || ||||||||||| |||||||| |||| |||||||| |||| ||||||| |
|
|
| T |
4167698 |
ccatccactaaatgtaaataagcctctagatcatgacaacaagctatgtcagcatcgggcttcaagtatggtgacatcttagtattaacacgta |
4167605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University