View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5315_high_2 (Length: 452)
Name: NF5315_high_2
Description: NF5315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5315_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-122; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 174 - 436
Target Start/End: Complemental strand, 37324399 - 37324130
Alignment:
| Q |
174 |
gggtatgtcaccaaacaagaacaacactagagtttat---atcttgcaacatctat----taaatgtgaagttgatatttctccacttcttacacttaat |
266 |
Q |
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| T |
37324399 |
gggtatgtcaccaaacaagaacaacactagagtttattatatcttgcaacatctatctattaaatgtgaagttgatatttctccacttcttacacttacc |
37324300 |
T |
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| Q |
267 |
gaactacaactaatatttagattatataatccgaaaacagacaaaaatacgattaataaaagtaagaaatgatctcctacatcatacaacaagttcatgg |
366 |
Q |
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| T |
37324299 |
gaactacaactaatatttagattatataatccgaaaacagacaaaaatacgattaataaaagtgagaaatgatctcctacatcatacaacaaattcatgg |
37324200 |
T |
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| Q |
367 |
taaatccatttaaggttatacaacttgtccatccaaaggagtagcatcaggcttctccacaacatgtatt |
436 |
Q |
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| T |
37324199 |
taaatccatttaaggttatacaacttgtccatccaaaggagtagcatcaggcttctccacaacatgtatt |
37324130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 37324572 - 37324463
Alignment:
| Q |
1 |
tttaaataattgttttagctacttatattgacatggatacttctatagttttatcgacatt-gaaaaatcattcaatatttatataatattaaaatcgaa |
99 |
Q |
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| T |
37324572 |
tttaaataattgttt-agctacttatattgacatggatacttctatagttttatggacatttgaaaaatcattcaatatttatataatattaaaattgaa |
37324474 |
T |
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| Q |
100 |
tagaacaatta |
110 |
Q |
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| T |
37324473 |
tagaacaatta |
37324463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 436
Target Start/End: Complemental strand, 37333386 - 37333345
Alignment:
| Q |
395 |
ccatccaaaggagtagcatcaggcttctccacaacatgtatt |
436 |
Q |
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| T |
37333386 |
ccattcaaaggagtagcatcatccttctccacaacatgtatt |
37333345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 202 - 254
Target Start/End: Complemental strand, 37334838 - 37334786
Alignment:
| Q |
202 |
agagtttatatcttgcaacatctattaaatgtgaagttgatatttctccactt |
254 |
Q |
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| T |
37334838 |
agagttgatatctttgaacacctactaaatgtgaagttgatatttcttcactt |
37334786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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