View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5315_high_5 (Length: 350)
Name: NF5315_high_5
Description: NF5315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5315_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 343
Target Start/End: Complemental strand, 6916190 - 6915848
Alignment:
| Q |
1 |
atcaaggcaccagagttggcagcttctttaaaacctttctcaattgcagggaaaaaattcgatggaatagcttgaccaacaagcatgttgtcaaattcaa |
100 |
Q |
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| T |
6916190 |
atcaaggcaccagagttggcagcttctttaaaacctttctcaattgcagggaaaaaattcgatggaatagcttgaccaacaagcatgttgtcaaattcaa |
6916091 |
T |
|
| Q |
101 |
acttagttcctgacccagcaggaagtggttcaatatatccaatcactcgtccatattgtccttgtcctccagattgcttcttatgtaaataatcaaaatc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
6916090 |
acttagttcctgacccagcaggaagtggttcaatatatccaatcactcgtccatattgtccttgccctccagattgcttcttatgtaaataatcaaaatc |
6915991 |
T |
|
| Q |
201 |
agcacgttgagtaacagtttctctgaagtttacccggggctttccaactgtagcatcaaccccatactccatcttaatgcatttaacataaatatctaag |
300 |
Q |
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| T |
6915990 |
agcacgttgagtaacagtttctctgaagtttacccggggctttccaactgtagcatcaaccccatactccatcttaatgcgtttaacataaatatctaag |
6915891 |
T |
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| Q |
301 |
tgtagttctcccattccagaaatgattgtttgcccactctctg |
343 |
Q |
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| T |
6915890 |
tgtagttctcccattccagaaatgattgtttgcccactctctg |
6915848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 107; Significance: 1e-53; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 139 - 261
Target Start/End: Original strand, 15039269 - 15039391
Alignment:
| Q |
139 |
ccaatcactcgtccatattgtccttgtcctccagattgcttcttatgtaaataatcaaaatcagcacgttgagtaacagtttctctgaagtttacccggg |
238 |
Q |
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|||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
15039269 |
ccaatcacccgtccatattgtccttgccctccggattgcttcttatgtaaataatcaaaatcagcacgttgagtaacagtttctctgaagtttacacggg |
15039368 |
T |
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| Q |
239 |
gctttccaactgtagcatcaacc |
261 |
Q |
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| T |
15039369 |
gctttccaactgtagcatcaacc |
15039391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 13 - 137
Target Start/End: Original strand, 15038314 - 15038438
Alignment:
| Q |
13 |
gagttggcagcttctttaaaacctttctcaattgcagggaaaaaattcgatggaatagcttgaccaacaagcatgttgtcaaattcaaacttagttcctg |
112 |
Q |
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||||||||||||||| ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||| |
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| T |
15038314 |
gagttggcagcttctataaaacctttctcaattgcagcgaaaaaatttgatggaatagcttgaccaacaagcatgttttcaaattcaaacttagtttctg |
15038413 |
T |
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| Q |
113 |
acccagcaggaagtggttcaatata |
137 |
Q |
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|||||||||| |||||||||||||| |
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| T |
15038414 |
acccagcagggagtggttcaatata |
15038438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 275 - 329
Target Start/End: Original strand, 15039923 - 15039977
Alignment:
| Q |
275 |
taatgcatttaacataaatatctaagtgtagttctcccattccagaaatgattgt |
329 |
Q |
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|||||| || |||||| ||||||||||| |||||||||||||||||||| ||||| |
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| T |
15039923 |
taatgcgttcaacatagatatctaagtgcagttctcccattccagaaataattgt |
15039977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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