View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5315_high_6 (Length: 327)

Name: NF5315_high_6
Description: NF5315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5315_high_6
NF5315_high_6
[»] chr2 (13 HSPs)
chr2 (21-300)||(22576121-22576408)
chr2 (66-300)||(11199422-11199664)
chr2 (71-291)||(44314187-44314418)
chr2 (71-291)||(44322366-44322597)
chr2 (71-300)||(41826101-41826340)
chr2 (21-291)||(33015339-33015620)
chr2 (71-300)||(2553784-2554023)
chr2 (73-291)||(6221114-6221344)
chr2 (71-180)||(7443888-7443998)
chr2 (71-291)||(19685523-19685751)
chr2 (73-180)||(27862071-27862179)
chr2 (71-183)||(10022642-10022754)
chr2 (21-54)||(24484193-24484226)
[»] chr5 (13 HSPs)
chr5 (72-300)||(42879323-42879562)
chr5 (76-300)||(9409689-9409924)
chr5 (71-291)||(2676692-2676923)
chr5 (71-291)||(23962579-23962808)
chr5 (71-291)||(18888796-18889026)
chr5 (71-291)||(39537535-39537763)
chr5 (71-291)||(13382746-13382978)
chr5 (78-291)||(13826365-13826581)
chr5 (71-291)||(13490116-13490348)
chr5 (185-300)||(16040323-16040438)
chr5 (76-181)||(5578871-5578978)
chr5 (251-288)||(20892416-20892453)
chr5 (21-55)||(2676642-2676676)
[»] chr8 (13 HSPs)
chr8 (21-300)||(7973118-7973408)
chr8 (73-291)||(16729461-16729688)
chr8 (108-291)||(45117230-45117424)
chr8 (71-291)||(31597248-31597480)
chr8 (71-291)||(1981318-1981554)
chr8 (71-300)||(4432208-4432448)
chr8 (71-291)||(3762424-3762655)
chr8 (71-291)||(39905955-39906184)
chr8 (72-300)||(7263769-7264008)
chr8 (71-181)||(18327041-18327151)
chr8 (192-300)||(18327212-18327320)
chr8 (71-181)||(40971172-40971283)
chr8 (252-300)||(40971361-40971409)
[»] chr4 (15 HSPs)
chr4 (21-300)||(39480388-39480680)
chr4 (72-300)||(36213464-36213700)
chr4 (72-283)||(6261771-6261995)
chr4 (72-291)||(10095168-10095400)
chr4 (126-291)||(7413889-7414064)
chr4 (126-291)||(7459970-7460145)
chr4 (186-291)||(52458870-52458974)
chr4 (186-291)||(52460127-52460231)
chr4 (72-181)||(55520293-55520402)
chr4 (250-300)||(6261718-6261768)
chr4 (75-180)||(52460003-52460111)
chr4 (75-180)||(52458746-52458854)
chr4 (108-180)||(51758214-51758287)
chr4 (250-291)||(51758369-51758410)
chr4 (71-180)||(23936039-23936149)
[»] chr3 (11 HSPs)
chr3 (71-300)||(19156820-19157060)
chr3 (71-291)||(53077113-53077344)
chr3 (71-291)||(15760586-15760817)
chr3 (71-300)||(52447869-52448110)
chr3 (108-291)||(10994295-10994489)
chr3 (21-291)||(27941661-27941942)
chr3 (71-291)||(25071364-25071601)
chr3 (185-300)||(1698271-1698386)
chr3 (184-300)||(24927987-24928103)
chr3 (71-123)||(24928166-24928218)
chr3 (21-55)||(19156770-19156804)
[»] chr6 (14 HSPs)
chr6 (71-291)||(1422682-1422913)
chr6 (71-291)||(1603097-1603328)
chr6 (71-291)||(22012260-22012491)
chr6 (72-291)||(1131500-1131731)
chr6 (74-291)||(34043268-34043502)
chr6 (74-291)||(18675083-18675311)
chr6 (73-230)||(21442480-21442648)
chr6 (73-300)||(26213000-26213238)
chr6 (71-300)||(20990181-20990404)
chr6 (71-300)||(26817089-26817325)
chr6 (74-181)||(15059899-15060007)
chr6 (249-291)||(13758923-13758965)
chr6 (21-55)||(34043215-34043249)
chr6 (19-51)||(33516977-33517009)
[»] chr7 (13 HSPs)
chr7 (21-291)||(8389445-8389726)
chr7 (72-291)||(20394931-20395162)
chr7 (71-300)||(18667095-18667335)
chr7 (73-180)||(43824055-43824163)
chr7 (71-291)||(4539596-4539824)
chr7 (71-300)||(13753842-13754082)
chr7 (71-291)||(31072670-31072903)
chr7 (72-300)||(35478114-35478353)
chr7 (185-300)||(44733378-44733493)
chr7 (249-300)||(28460366-28460417)
chr7 (252-291)||(43824168-43824207)
chr7 (249-300)||(44733551-44733602)
chr7 (21-51)||(6189781-6189811)
[»] chr1 (18 HSPs)
chr1 (72-291)||(27430936-27431166)
chr1 (71-291)||(22070230-22070461)
chr1 (71-291)||(34307592-34307823)
chr1 (71-291)||(48596498-48596722)
chr1 (71-291)||(21906106-21906337)
chr1 (71-291)||(5049181-5049413)
chr1 (71-291)||(48999134-48999361)
chr1 (138-291)||(25094960-25095123)
chr1 (135-291)||(17967470-17967636)
chr1 (186-300)||(9023068-9023181)
chr1 (138-240)||(23664299-23664411)
chr1 (72-181)||(44310186-44310295)
chr1 (251-300)||(44310372-44310421)
chr1 (72-128)||(23664437-23664493)
chr1 (21-55)||(22070179-22070213)
chr1 (21-54)||(5049130-5049163)
chr1 (71-128)||(9022942-9022998)
chr1 (80-128)||(25094886-25094934)
[»] scaffold0016 (5 HSPs)
scaffold0016 (74-291)||(87778-88006)
scaffold0016 (71-291)||(88253-88485)
scaffold0016 (71-291)||(88729-88961)
scaffold0016 (74-291)||(89205-89433)
scaffold0016 (71-180)||(87426-87536)
[»] scaffold0093 (2 HSPs)
scaffold0093 (71-172)||(50655-50757)
scaffold0093 (254-291)||(50849-50886)
[»] scaffold0308 (1 HSPs)
scaffold0308 (71-174)||(12364-12465)


Alignment Details
Target: chr2 (Bit Score: 150; Significance: 3e-79; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 21 - 300
Target Start/End: Complemental strand, 22576408 - 22576121
Alignment:
Q  21 acggcctagggcccatgccagtagggggcccaaaagnnnnnnnnnaaggtgggg-tgtatatagaaacatttggatttttggggttacatatagcaaaat 119  Q
    ||||||||||||||||||| ||||||||||||||||         || |||||| |||||||||||| |||||||||| ||||| |||||||||||||||    
T  22576408 acggcctagggcccatgccggtagggggcccaaaagttttttt--aatgtgggggtgtatatagaaatatttggatttgtgggggtacatatagcaaaat 22576311  T
Q  120 tctctgaaaggcctaaactttgacatgataaaggaatgggctgaaatctgttaatgtttttgac---------agatttactatatatatcccatgtggt 210  Q
    ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |||| |         |||||||||||||||||||||||||||    
T  22576310 tctctgaaaggcccaaactttgacatgataaagcaatgggctgaaatctgttaatgtgtttggcctcttagtgagatttactatatatatcccatgtggt 22576211  T
Q  211 acaaatatttctatatacactctcctataannnnnnnnggttgttcttaataatatgctcaaaaatttattatcgaagaaagtaatgata 300  Q
    |||||||||||||||||||| |||||||||        ||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  22576210 acaaatatttctatatacaccctcctataattatttttggttgttcttaataatatgctcaaaaatttattatcgaagaaattaatgata 22576121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 66 - 300
Target Start/End: Complemental strand, 11199664 - 11199422
Alignment:
Q  66 aaggtggggtgtatatagaaacatttggatttttggggttacatatagcaaaattctctgaaaggcctaaactttgacatgataaaggaatgggctgaaa 165  Q
    ||||||||||||||||||||| ||||||||||| ||||| | ||||||||||||||||||||||||| |||||||||||||||||| || | ||||||||    
T  11199664 aaggtggggtgtatatagaaatatttggattttgggggt-atatatagcaaaattctctgaaaggcccaaactttgacatgataaaagactaggctgaaa 11199566  T
Q  166 tctgttaatgtttttgac----------agatttactatatatatcccatgtggtacaaatatttctatatacactctcctataannnnnnnnggttgtt 255  Q
    ||||||| |||||||| |          |||||| ||||||||| | ||||| | | |||||||||||||||||||||||| | |         ||||||    
T  11199565 tctgttattgtttttggcccttttaacgagattttctatatataccacatgtagcataaatatttctatatacactctcctct-atttttttttgttgtt 11199467  T
Q  256 cttaataatatgctcaaaaatttattatcgaagaaagtaatgata 300  Q
    |||||||||||||| ||||||||||||||||||||| || |||||    
T  11199466 cttaataatatgctaaaaaatttattatcgaagaaattagtgata 11199422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 71 - 291
Target Start/End: Complemental strand, 44314418 - 44314187
Alignment:
Q  71 ggggtgtatatagaaacatttggatttttggggttacatatagcaaaattctctg-aaaggcctaaactttgacatgataaaggaatgggctgaaatctg 169  Q
    |||||||||||||||| ||||||||||  |||| || |||||| ||  ||||||| ||||||| |||||||||||||||||||||||||||||| |||||    
T  44314418 ggggtgtatatagaaatatttggatttcagggggtatatatagaaattttctctgcaaaggcccaaactttgacatgataaaggaatgggctgacatctg 44314319  T
Q  170 ttaatgtttttgac----------agatttactatatatatcccatgtggtacaaatatttctatatacactctcctataannnnnnnnggttgttctta 259  Q
    ||| | |||||| |          |||||| |||||||||||||||||   ||||| |||||||||||||| ||||| |||        ||||||||||     
T  44314318 ttagtatttttggcctttttagtgagatttgctatatatatcccatgtaacacaaaaatttctatatacaccctcctgtaaaaaaatttggttgttcttg 44314219  T
Q  260 ataatatgctcaaaaatttattatcgaagaaa 291  Q
    ||||||||||||||||||||||||||||||||    
T  44314218 ataatatgctcaaaaatttattatcgaagaaa 44314187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 71 - 291
Target Start/End: Complemental strand, 44322597 - 44322366
Alignment:
Q  71 ggggtgtatatagaaacatttggatttttggggttacatatagcaaaattctctg-aaaggcctaaactttgacatgataaaggaatgggctgaaatctg 169  Q
    |||||||||||||||| ||||||||||  |||| || |||||| ||  ||||||| ||||||| |||||||||||||||||||||||||||||| |||||    
T  44322597 ggggtgtatatagaaatatttggatttcagggggtatatatagaaattttctctgcaaaggcccaaactttgacatgataaaggaatgggctgacatctg 44322498  T
Q  170 ttaatgtttttgac----------agatttactatatatatcccatgtggtacaaatatttctatatacactctcctataannnnnnnnggttgttctta 259  Q
    ||| | |||||| |          |||||| |||||||||||||||||   ||||| |||||||||||||| ||||| |||        ||||||||||     
T  44322497 ttagtatttttggcctttttagtgagatttgctatatatatcccatgtaacacaaaaatttctatatacaccctcctgtaaaaaaatttggttgttcttg 44322398  T
Q  260 ataatatgctcaaaaatttattatcgaagaaa 291  Q
    ||||||||||||||||||||||||||||||||    
T  44322397 ataatatgctcaaaaatttattatcgaagaaa 44322366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 71 - 300
Target Start/End: Complemental strand, 41826340 - 41826101
Alignment:
Q  71 ggggtgtatatagaaacatttggatttttggggttacatatagcaaaattctctg-aaaggcctaaactttgacatgataaaggaatgggctgaaatctg 169  Q
    ||||| |||||||||| ||||||||||| |||| || |||||| ||||||||||| ||||||| || |||||||||| || || |||||||||||||||     
T  41826340 ggggtatatatagaaatatttggattttagggggtatatatagtaaaattctctgaaaaggcccaatctttgacatgttatagaaatgggctgaaatcta 41826241  T
Q  170 ttaatgtttttgac---------agatttactatatatatcccatgtggtacaaatatttctatatacactctcctataannnnnnnnggttgttcttaa 260  Q
    |||||||||||| |         |||||  ||||||||||||||||  | ||||| |||||||||||||| |||||||||        ||||||||||||    
T  41826240 ttaatgtttttgcccttttagtgagattcgctatatatatcccatgcagcacaaaaatttctatatacaccctcctataaaaaaaattggttgttcttaa 41826141  T
Q  261 taatatgctcaaaaatttattatcgaagaaagtaatgata 300  Q
    |||||||||  |||||||||||||||||||| || |||||    
T  41826140 taatatgcttgaaaatttattatcgaagaaattagtgata 41826101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 21 - 291
Target Start/End: Complemental strand, 33015620 - 33015339
Alignment:
Q  21 acggcctagggcccatgccagtagggggcccaaaagnnnnnnnnnaaggt---ggggtgtatatagaaacatttggatttttggggttacatatagcaaa 117  Q
    ||||||||||||||||||| |||||||||||||||          |||||   |||||||||||||||| ||||||||||  |||| || |||||| |||    
T  33015620 acggcctagggcccatgccggtagggggcccaaaa---tttttttaaggtaagggggtgtatatagaaatatttggatttcgggggatatatatagaaaa 33015524  T
Q  118 attctctg-aaaggcctaaactttgacatgataaaggaatgggctgaaatctgttaatgtttttgac----------agatttactatatatatcccatg 206  Q
    |||||| | ||||||| ||||||||||||| ||||| |||||||||| |||||||| | |||||| |          ||||||  |||||||||||||||    
T  33015523 attctcagtaaaggcccaaactttgacatggtaaagaaatgggctgacatctgttagtatttttggcccttttagtgagatttgttatatatatcccatg 33015424  T
Q  207 tggtacaaatatttctatatacactctcctataannnnnnnnggttgttcttaataatatgctcaaaaatttattatcgaagaaa 291  Q
    |   |||||||||||||||||||| |||||||||        | |||||||| ||||||||||||||||||||||||||||||||    
T  33015423 taacacaaatatttctatatacaccctcctataaaaaaatttgcttgttcttgataatatgctcaaaaatttattatcgaagaaa 33015339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 71 - 300
Target Start/End: Original strand, 2553784 - 2554023
Alignment:
Q  71 ggggtgtatatagaaacatttggatttttggggttacatatagcaaaattctctg-aaaggcctaaactttgacatgataaaggaatgggctgaaatctg 169  Q
    ||||| |||||||||| ||||||||||| |||| || |||||| ||||||||||| ||||||| || |||||||||| || || |||||||||||||||     
T  2553784 ggggtatatatagaaatatttggattttagggggtatatatagtaaaattctctgaaaaggcccaatctttgacatgttatagaaatgggctgaaatcta 2553883  T
Q  170 ttaatgtttttgac---------agatttactatatatatcccatgtggtacaaatatttctatatacactctcctataannnnnnnnggttgttcttaa 260  Q
    |||||||||||| |         |||||  ||||||||||||||||  | ||||| |||||||||||||| |||||||||        ||||||||||||    
T  2553884 ttaatgtttttgcccttttagtgagattcgctatatatatcccatgcagcacaaaaatttctatatacaccctcctataaaaaaaattggttgttcttaa 2553983  T
Q  261 taatatgctcaaaaatttattatcgaagaaagtaatgata 300  Q
    |||||| ||  |||||||||||||||||||| || |||||    
T  2553984 taatatacttgaaaatttattatcgaagaaattagtgata 2554023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 73 - 291
Target Start/End: Original strand, 6221114 - 6221344
Alignment:
Q  73 ggtgtatatagaaacatttggatttttggggttacatatagcaaaattctctg-aaaggcctaaactttgacatgataaaggaatgggctgaaatctgtt 171  Q
    |||||||||||||  ||||||||||  |||| || |||||| ||||||||||| ||||||  |||||||||||||||||||||||||||||| |||||||    
T  6221114 ggtgtatatagaagtatttggatttcgggggatatatatagaaaaattctctgtaaaggctcaaactttgacatgataaaggaatgggctgacatctgtt 6221213  T
Q  172 aatgttttt----------gacagatttactatatatatcccatgtggtacaaatatttctatatacactctcctat-aannnnnnnnggttgttcttaa 260  Q
    | | |||||          |  |||||| |||||||||||||||||   |||||||||||||||||||| ||||||| ||        |||||||||| |    
T  6221214 agtatttttgggccttttagtgagattttctatatatatcccatgtaacacaaatatttctatatacaccctcctataaaaaaaatttggttgttcttga 6221313  T
Q  261 taatatgctcaaaaatttattatcgaagaaa 291  Q
    |||||||||||||||||||||||||||||||    
T  6221314 taatatgctcaaaaatttattatcgaagaaa 6221344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 71 - 180
Target Start/End: Original strand, 7443888 - 7443998
Alignment:
Q  71 ggggtgtatatagaaacatttggatttttggggttacatatagcaaaattctctgaaa-ggcctaaactttgacatgataaaggaatgggctgaaatctg 169  Q
    |||||||||||| ||| ||||||||||| | || || |||||||||||||| | |||| |||| ||||||||| |||||| |||||||||||||||||||    
T  7443888 ggggtgtatataaaaatatttggattttggtgggtatatatagcaaaattcaccgaaaaggcccaaactttgatatgatataggaatgggctgaaatctg 7443987  T
Q  170 ttaatgttttt 180  Q
    |||||||||||    
T  7443988 ttaatgttttt 7443998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 71 - 291
Target Start/End: Original strand, 19685523 - 19685751
Alignment:
Q  71 ggggtgtatatagaaacatttggatttttggggttacatatagcaaaattctctg-aaaggcctaaactttgacatgataaaggaatgggctgaaatctg 169  Q
    |||||||||||||||| ||||||||||| |||| || |||||| ||| ||||||  ||||  | |||||||||||||||||||||||||||||| || ||    
T  19685523 ggggtgtatatagaaatatttggattttggggggtatatatagaaaatttctcttcaaagatccaaactttgacatgataaaggaatgggctgacatttg 19685622  T
Q  170 ttaatgttttt----------gacagatttactatatatatcccatgtggtacaaatatttctatatacactctcctataannnnnnnnggttgttctta 259  Q
    ||| | |||||          |  |||||| |||||||||||||||||   ||| |  ||||||||||||| |||||||||        ||||||||||     
T  19685623 ttagtattttttgcccttttagtgagatttgctatatatatcccatgt--aacacaattttctatatacaccctcctataa-aaaatttggttgttcttg 19685719  T
Q  260 ataatatgctcaaaaatttattatcgaagaaa 291  Q
    |||||||||| |||||||||||||||||||||    
T  19685720 ataatatgctaaaaaatttattatcgaagaaa 19685751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 73 - 180
Target Start/End: Complemental strand, 27862179 - 27862071
Alignment:
Q  73 ggtgtatatagaaacatttggatttttggggttacatatagcaaaattctctgaaa-ggcctaaactttgacatgataaaggaatgggctgaaatctgtt 171  Q
    |||||||||| ||| ||||||||||| |||| || |||||| ||||||| |||||| |||| ||||||||| |||||| || ||| |||||||||||| |    
T  27862179 ggtgtatataaaaatatttggattttggggggtatatatagtaaaattcactgaaaaggcccaaactttgatatgatatagaaataggctgaaatctggt 27862080  T
Q  172 aatgttttt 180  Q
    |||||||||    
T  27862079 aatgttttt 27862071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 71 - 183
Target Start/End: Original strand, 10022642 - 10022754
Alignment:
Q  71 ggggtgtatatagaaacatttggatttttggggttacatatagcaaaattctctgaaaggcctaaact-ttgacatgataaaggaatgggctgaaatctg 169  Q
    |||||||||||||||| |||| | ||| |||||||| |||||||||| ||| |  |||||||  |||  |||||||||| |||||  ||| |||| ||||    
T  10022642 ggggtgtatatagaaatattttg-tttatggggttatatatagcaaatttcaccaaaaggccccaaccattgacatgatgaaggacaggggtgaagtctg 10022740  T
Q  170 ttaatgtttttgac 183  Q
    ||||||||||||||    
T  10022741 ttaatgtttttgac 10022754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 54
Target Start/End: Original strand, 24484193 - 24484226
Alignment:
Q  21 acggcctagggcccatgccagtagggggcccaaa 54  Q
    |||||||||||||||||||| |||||||||||||    
T  24484193 acggcctagggcccatgccattagggggcccaaa 24484226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 129; Significance: 9e-67; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 72 - 300
Target Start/End: Original strand, 42879323 - 42879562
Alignment:
Q  72 gggtgtatatagaaacatttggatttttggggttacatatagcaaaattctctgaaa-ggcctaaactttgacatgataaaggaatgggctgaaatctgt 170  Q
    ||||||||||||||| ||||||||||| |||| || ||||||||||||| ||||||| |||| ||||||||| |||||||||||||||||||||||||||    
T  42879323 gggtgtatatagaaatatttggattttagggggtatatatagcaaaattatctgaaaaggcccaaactttgagatgataaaggaatgggctgaaatctgt 42879422  T
Q  171 taatgtttttgac----------agatttactatatatatcccatgtggtacaaatatttctatatacactctcctataannnnnnnnggttgttcttaa 260  Q
    ||||||||||| |          ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||        | ||||||||||    
T  42879423 taatgtttttggcccttttagtgagatttactatatatatcccatgtggtacaaatatttctatatacaccctcctataactttttttgattgttcttaa 42879522  T
Q  261 taatatgctcaaaaatttattatcgaagaaagtaatgata 300  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  42879523 taatatgctcaaaaatttattatcgaagaaattaatgata 42879562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 76 - 300
Target Start/End: Complemental strand, 9409924 - 9409689
Alignment:
Q  76 gtatatagaaacatttggatttttggggttacatatagcaaaattctctgaaa-ggcctaaactttgacatgataaaggaatgggctgaaatctgttaat 174  Q
    ||||||||||| ||||||||||| |||| || ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  9409924 gtatatagaaatatttggattttggggggtatatatagcaaaattatctgaaaaggcctaaactttgacatgataaaggaatgggctgaaatctgttaat 9409825  T
Q  175 gtttttgac----------agatttactatatatatcccatgtggtacaaatatttctatatacactctcctataannnnnnnnggttgttcttaataat 264  Q
    ||||||| |          ||||||| |||||||||||||||||| |||||||||||||||||||| |||||||||        ||||||||||||||||    
T  9409824 gtttttggcccttttagtgagatttattatatatatcccatgtggcacaaatatttctatatacaccctcctataattttttttggttgttcttaataat 9409725  T
Q  265 atgctcaaaaatttattatcgaagaaagtaatgata 300  Q
    ||||| ||||||||||||||||||||| ||||||||    
T  9409724 atgctaaaaaatttattatcgaagaaattaatgata 9409689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 71 - 291
Target Start/End: Original strand, 2676692 - 2676923
Alignment:
Q  71 ggggtgtatatagaaacatttggatttttggggttacatatagcaaaattctctg-aaaggcctaaactttgacatgataaaggaatgggctgaaatctg 169  Q
    |||||||||||||||| ||||||||||  |||| || |||||| ||||||||||  ||||||| |||||||||||||||||||||||||||||| |||||    
T  2676692 ggggtgtatatagaaatatttggatttcgggggatatatatagaaaaattctctataaaggcccaaactttgacatgataaaggaatgggctgacatctg 2676791  T
Q  170 ttaatgtttttgac----------agatttactatatatatcccatgtggtacaaatatttctatatacactctcctataannnnnnnnggttgttctta 259  Q
    ||| | |||||| |          |||||| |||||||||||||||||   |||||||||||||||||||| |||||||||        ||||||||||     
T  2676792 ttagtatttttggcccttttagtgagattttctatatatatcccatgtaacacaaatatttctatatacaccctcctataaaaaaatttggttgttcttg 2676891  T
Q  260 ataatatgctcaaaaatttattatcgaagaaa 291  Q
    |||||||||| |||||||||||||||||||||    
T  2676892 ataatatgcttaaaaatttattatcgaagaaa 2676923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 71 - 291
Target Start/End: Original strand, 23962579 - 23962808
Alignment:
Q  71 ggggtgtatatagaaacatttggatttttggggttacatatagcaaaattctctg-aaaggcctaaactttgacatgataaaggaatgggctgaaatctg 169  Q
    |||||||||||||||| ||||||||||  |||| || |||||  ||||||||||| ||||||| ||||||||||||| |||||||||||||||| ||||     
T  23962579 ggggtgtatatagaaatatttggatttcggggggtatatataa-aaaattctctgcaaaggcccaaactttgacatgctaaaggaatgggctgacatcta 23962677  T
Q  170 ttaatgtttttgac---------agatttactatatatatcccatgtggtacaaatatttctatatacactctcctataannnnnnnnggttgttcttaa 260  Q
    ||| | || ||| |         |||||| |||||||||||| ||||   ||||| |||||||||||||| |||||||||        |||||||||| |    
T  23962678 ttagtattgttgcccttttagtgagatttgctatatatatccaatgtaacacaaacatttctatatacaccctcctataaaaaaatttggttgttcttga 23962777  T
Q  261 taatatgctcaaaaatttattatcgaagaaa 291  Q
    |||||||||||||||||||||||||||||||    
T  23962778 taatatgctcaaaaatttattatcgaagaaa 23962808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 71 - 291
Target Start/End: Original strand, 18888796 - 18889026
Alignment:
Q  71 ggggtgtatatagaaacatttggatttttggggttacatatagcaaaattctctg-aaaggcctaaactttgacatgataaaggaatgggctgaaatctg 169  Q
    |||||||||||||||| ||||||||||  |||||   |||||| ||| ||||||| ||||||| |||||||||||||||||||||||||||||| |||||    
T  18888796 ggggtgtatatagaaatatttggatttagggggtgt-atatagaaaacttctctgcaaaggcccaaactttgacatgataaaggaatgggctgacatctg 18888894  T
Q  170 ttaatgttttt----------gacagatttactatatatatcccatgtggtacaaatatttctatatacactctcctataannnnnnnnggttgttctta 259  Q
    ||| | |||||          |  ||||||  || |||||||||||||   ||||| |||||||||||||| |||||||||        ||||||||||     
T  18888895 ttagtattttttgcccttttagtgagatttgttagatatatcccatgtaacacaaaaatttctatatacaccctcctataaaaaaaattggttgttcttg 18888994  T
Q  260 ataatatgctcaaaaatttattatcgaagaaa 291  Q
    ||||||||||||||||||||||||||||||||    
T  18888995 ataatatgctcaaaaatttattatcgaagaaa 18889026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 71 - 291
Target Start/End: Complemental strand, 39537763 - 39537535
Alignment:
Q  71 ggggtgtatatagaaacatttggatttttggggttacatatagcaaaattctctgaaa-ggcctaaactttgacatgataaaggaatgggctgaaatctg 169  Q
    ||||||||| || ||| ||||||||||| ||||| | ||||||||||||||||||||| |||  |||||||||||||||| |  ||||||||||||||||    
T  39537763 ggggtgtatgtaaaaatatttggattttgggggt-atatatagcaaaattctctgaaaaggcgcaaactttgacatgatataaaaatgggctgaaatctg 39537665  T
Q  170 ttaatgtttttgac---------agatttactatatatatcccatgtggtacaaatatttctatatacactctcctataannnnnnnnggttgttcttaa 260  Q
    || || |||||| |         |||||| ||||||||||||||||  | ||||| |||||||||||||| |||||||||        | ||||||||||    
T  39537664 tttatttttttggccctttagtgagatttgctatatatatcccatgcagcacaaa-atttctatatacaccctcctataaaaaacattgattgttcttaa 39537566  T
Q  261 taatatgctcaaaaatttattatcgaagaaa 291  Q
    |||||||||| ||||| ||||||||||||||    
T  39537565 taatatgctcgaaaatatattatcgaagaaa 39537535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 71 - 291
Target Start/End: Complemental strand, 13382978 - 13382746
Alignment:
Q  71 ggggtgtatatagaaacatttggatttttggggttacatatagcaaaattctctg-aaaggcctaaactttgacatgataaaggaatgggctgaaatctg 169  Q
    |||||| ||||||||| |||||||||||  ||| || |||||| | ||||||||  ||||||  |||||||||||||||||||||||| ||||| |||||    
T  13382978 ggggtgcatatagaaatatttggattttgagggatatatatagaagaattctcttcaaaggctcaaactttgacatgataaaggaatgagctgacatctg 13382879  T
Q  170 ttaatgtttttgac----------agatttactatatatatcccatgtggtacaaatatttctatatacactctcctat-aannnnnnnnggttgttctt 258  Q
    ||| | |||||| |          |||||| |||||||||||||||||   |||||  ||||||||||||| ||||||| ||        ||||||||||    
T  13382878 ttagtatttttggcccttttagtgagatttgctatatatatcccatgtaacacaaaattttctatatacaccctcctataaaaaaaaattggttgttctt 13382779  T
Q  259 aataatatgctcaaaaatttattatcgaagaaa 291  Q
     ||||||||||||||||||||||||| ||||||    
T  13382778 gataatatgctcaaaaatttattatctaagaaa 13382746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 78 - 291
Target Start/End: Complemental strand, 13826581 - 13826365
Alignment:
Q  78 atatagaaacatttggatttttggggttacatatagcaaaattctctgaaa--ggcctaaactttgacatgataaagga-atgggctgaaatctgttaat 174  Q
    ||||||||| |||||| || ||||||  | |||||||||||||||||||||  |  |||||| |||||||||||||||  |||   ||||||| |||| |    
T  13826581 atatagaaatatttgg-ttgttggggacagatatagcaaaattctctgaaaatgctctaaacattgacatgataaaggggatgaattgaaatcagttatt 13826483  T
Q  175 gtttttgaca-gatttactatatatatcccatgtggtacaaatatttctatatacactctcctataannnnnnnnggttgttcttaataatatgctcaaa 273  Q
    |||||| ||  ||||| ||||||||| ||||||| | |||| ||||||||||||||| ||| | |||        |||||||||||||||| ||||||||    
T  13826482 gttttttacgcgatttgctatatataccccatgtagcacaagtatttctatatacaccctcttgtaaaaaaaattggttgttcttaataatgtgctcaaa 13826383  T
Q  274 aatttattatcgaagaaa 291  Q
    |||||| |||||||||||    
T  13826382 aatttactatcgaagaaa 13826365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 71 - 291
Target Start/End: Original strand, 13490116 - 13490348
Alignment:
Q  71 ggggtgtatatagaaacatttggatttttggggttacatatagcaaaattctctgaaaggcct-aaactttgacatgataaaggaatgggctgaaatctg 169  Q
    |||||||||||| ||| ||||||||||| ||||  | |||||||||||||| |||||| | || ||| ||||| |||||| |||||||| ||||||||||    
T  13490116 ggggtgtatataaaaatatttggattttggggggaatatatagcaaaattcactgaaaaggctcaaaatttgatatgatataggaatggactgaaatctg 13490215  T
Q  170 ttaatgttttt-----------gacagatttactatatatatcccatgtggtacaaatatttctatatacactctcctat-aannnnnnnnggttgttct 257  Q
    |||||||||||           |   ||||| ||||||||||||||||  | ||| | ||||||||| |||| ||||||| ||        |||||||||    
T  13490216 ttaatgtttttttgcccttttagtgtgatttgctatatatatcccatgcagcacaca-atttctatacacaccctcctataaaaaaaatttggttgttct 13490314  T
Q  258 taataatatgctcaaaaatttattatcgaagaaa 291  Q
    ||||||||||||| ||||||||||||||||||||    
T  13490315 taataatatgctcgaaaatttattatcgaagaaa 13490348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 185 - 300
Target Start/End: Complemental strand, 16040438 - 16040323
Alignment:
Q  185 gatttactatatatatcccatgtggtacaaatatttctatatacactctcctataannnnnnnnggttgttcttaataatatgctcaaaaatttattatc 284  Q
    ||||| ||||||||||||||||| | ||||||||||||||||| || |||||||||        |||||||||||||||| ||||||||||||| ||||     
T  16040438 gatttgctatatatatcccatgtagcacaaatatttctatataaaccctcctataaaaaaaattggttgttcttaataatgtgctcaaaaatttgttatt 16040339  T
Q  285 gaagaaagtaatgata 300  Q
    ||||||| || |||||    
T  16040338 gaagaaattagtgata 16040323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 76 - 181
Target Start/End: Complemental strand, 5578978 - 5578871
Alignment:
Q  76 gtatatagaaacatttggatttttg-gggttacatatagcaaaattctctgaaa-ggcctaaactttgacatgataaaggaatgggctgaaatctgttaa 173  Q
    ||||||||||| |||| |||||| | ||| ||  |||| ||||||||| ||||| || | ||||||||| | |||| |||||||| ||||||||||||||    
T  5578978 gtatatagaaatatttagattttggaggggtatgtatatcaaaattctttgaaaaggtccaaactttgataagatataggaatggactgaaatctgttaa 5578879  T
Q  174 tgtttttg 181  Q
    ||||||||    
T  5578878 tgtttttg 5578871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 251 - 288
Target Start/End: Complemental strand, 20892453 - 20892416
Alignment:
Q  251 ttgttcttaataatatgctcaaaaatttattatcgaag 288  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  20892453 ttgttcttaataatatgctcaaaaaattattatcgaag 20892416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 55
Target Start/End: Original strand, 2676642 - 2676676
Alignment:
Q  21 acggcctagggcccatgccagtagggggcccaaaa 55  Q
    ||||||||||||||||||| |||||||||||||||    
T  2676642 acggcctagggcccatgccggtagggggcccaaaa 2676676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 119; Significance: 9e-61; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 21 - 300
Target Start/End: Complemental strand, 7973408 - 7973118
Alignment:
Q  21 acggcctagggcccatgccagtagggggcccaaaagnnnnnnnnnaaggtg--gggtgtatatagaaacatttggatttttggggttacatatagcaaaa 118  Q
    ||||||||||||||||||| ||||||||||||||||         ||||||  ||| ||||||||||| ||||||||||| |||| || |||||||||||    
T  7973408 acggcctagggcccatgccggtagggggcccaaaagttttttt--aaggtgtagggggtatatagaaatatttggattttggggggtatatatagcaaaa 7973311  T
Q  119 ttctctg-aaaggcctaaactttgacatgataaaggaatgggctgaaatctgttaatgtttttgac----------agatttactatatatatcccatgt 207  Q
    ||||||| ||||||  ||||||||||||||| ||||||||| |||||||||||| ||||||||| |          ||||||||||||||||| ||||||    
T  7973310 ttctctgaaaaggctcaaactttgacatgattaaggaatggactgaaatctgttgatgtttttggcccttttagtgagatttactatatatattccatgt 7973211  T
Q  208 ggtacaaatatttctatatacactctcctataannnnnnnnggttgttcttaataatatgctcaaaaatttattatcgaagaaagtaatgata 300  Q
    || |||||||||||||||||||| |||||||||        ||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  7973210 ggcacaaatatttctatatacaccctcctataattttttttggttgttcttaataatatgctcaaaaatttattatcgaagaaattaatgata 7973118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 73 - 291
Target Start/End: Original strand, 16729461 - 16729688
Alignment:
Q  73 ggtgtatatagaaacatttggatttttggggttacatatagcaaaattctctgaaaggcctaaactttgacatgataaaggaatgggctgaaatctgtta 172  Q
    |||||||||||||| ||||||||||   | | ||  |||||||||| | ||||||||||| |||||||||||||||| ||||||||||||||||||||||    
T  16729461 ggtgtatatagaaatatttggatttggagcggtatgtatagcaaaactatctgaaaggcccaaactttgacatgatataggaatgggctgaaatctgtta 16729560  T
Q  173 atgttttt----------gacagatttactatatatatcccatgtggtacaaatatttctatatacactctcctataannnnnnnnggttgttcttaata 262  Q
    ||||||||          || |||||| ||||||||||||||||  | ||||| |||||||||||||| |||||||||        ||||||| ||||||    
T  16729561 atgtttttggcccttttagagagatttgctatatatatcccatgcagcacaaaaatttctatatacaccctcctataa-aaaaattggttgtttttaata 16729659  T
Q  263 atatgctcaaaaatttattatcgaagaaa 291  Q
    |||||||| ||||||||||||||||||||    
T  16729660 atatgctcgaaaatttattatcgaagaaa 16729688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 108 - 291
Target Start/End: Original strand, 45117230 - 45117424
Alignment:
Q  108 atatagcaaaattctctg-aaaggcctaaactttgacatgataaaggaatgggctgaaatctgttaatgtttttgac----------agatttactatat 196  Q
    |||||| |||||| |||| ||||||| |||||||||||||||||||||||||||||| || ||||| | |||||| |          |||||| ||||||    
T  45117230 atatagaaaaattatctgcaaaggcccaaactttgacatgataaaggaatgggctgacatttgttagtatttttggctcttttagtgagatttgctatat 45117329  T
Q  197 atatcccatgtggtacaaatatttctatatacactctcctataannnnnnnnggttgttcttaataatatgctcaaaaatttattatcgaagaaa 291  Q
    |||||||||||   ||||| |||||||||||||| |||||||||        |||||||||| ||||||||||||||||||||||||||||||||    
T  45117330 atatcccatgtaacacaaaaatttctatatacaccctcctataaaaatatttggttgttcttgataatatgctcaaaaatttattatcgaagaaa 45117424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 71 - 291
Target Start/End: Original strand, 31597248 - 31597480
Alignment:
Q  71 ggggtgtatatagaaacatttggatttttggggttacatatagcaaaattctctg-aaaggcctaaactttgacatgataaaggaatgggctgaaatctg 169  Q
    |||||| ||||||||| ||||||||||  || | || |||||| | ||||||||  ||||||| |||||||||||||||||||||||||||||| |||||    
T  31597248 ggggtgcatatagaaatatttggatttcgggaggtatatatagaagaattctcttcaaaggcccaaactttgacatgataaaggaatgggctgacatctg 31597347  T
Q  170 ttaatgtttttgac----------agatttactatatatatcccatgtggtacaaatatttctatatacactctcctat-aannnnnnnnggttgttctt 258  Q
    ||| | |||||| |          |||||| |||||||||||||||||   |||||  ||||||||||||| ||||||| ||        ||||||||||    
T  31597348 ttagtatttttggcccttttagtgagatttgctatatatatcccatgtaacacaaaagtttctatatacaccctcctataaaatttttttggttgttctt 31597447  T
Q  259 aataatatgctcaaaaatttattatcgaagaaa 291  Q
     ||||||||||||||||||||||||||||||||    
T  31597448 gataatatgctcaaaaatttattatcgaagaaa 31597480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 71 - 291
Target Start/End: Original strand, 1981318 - 1981554
Alignment:
Q  71 ggggtgtatatagaaacatttggatttttggggttacatatagcaaaattctctg-aaaggcctaaactttgacatgataaaggaatgggctgaaatctg 169  Q
    |||||||||||||||| |||||||||| ||||  || |||||| || |||||||| ||||||| |||||||||||||||||||||||||||||| |||||    
T  1981318 ggggtgtatatagaaatatttggatttctgggaatatatatagaaacattctctgcaaaggcccaaactttgacatgataaaggaatgggctgacatctg 1981417  T
Q  170 ttaatgtttttgac----------agatttac--tatatatatcccatgtggtacaaatatttctatatacactctcctataannnnnnnnggttgttct 257  Q
    ||| | |||||| |          |||||| |  ||||||||||||||||   |||||||||||||||||||| |||||||||        |||||||||    
T  1981418 ttagtatttttggcccttttagtgagatttgctatatatatatcccatgtaacacaaatatttctatatacaccctcctataaaaaaatttggttgttct 1981517  T
Q  258 taataatatgctc---aaaaatttattatcgaagaaa 291  Q
    | || ||||||||   |||||| ||||||||||||||    
T  1981518 tgattatatgctcaaaaaaaatgtattatcgaagaaa 1981554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 71 - 300
Target Start/End: Complemental strand, 4432448 - 4432208
Alignment:
Q  71 ggggtgtatatagaaacatttggatttttggggttacatatagcaaaattctctgaaa-ggcctaaactttgacatgataaaggaatgggctgaaatctg 169  Q
    |||||||||||| ||| ||||||||||| |||| || |||||||||| |||  ||||| |||| ||||||||| |||||| |||||||||||||||||||    
T  4432448 ggggtgtatataaaaatatttggattttggggggtatatatagcaaagttcattgaaaaggcccaaactttgatatgatataggaatgggctgaaatctg 4432349  T
Q  170 ttaatg--tttttgac-----ag----atttactatatatatcccatgtggtacaaatatttctatatacactctcctataannnnnnnnggttgttctt 258  Q
    || |||  |||||| |     ||    |||| ||||||||||||||||  | ||||| |||||||||||||| |||||||||        ||||||||||    
T  4432348 tttatgtttttttgcccttttagtgcaatttgctatatatatcccatgcagcacaaa-atttctatatacaccctcctataaaaaaatttggttgttctt 4432250  T
Q  259 aataatatgctcaaaaatttattatcgaagaaagtaatgata 300  Q
    || |||||||||  ||||||||||||||||||| | ||||||    
T  4432249 aaaaatatgctcggaaatttattatcgaagaaattgatgata 4432208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 71 - 291
Target Start/End: Original strand, 3762424 - 3762655
Alignment:
Q  71 ggggtgtatatagaaacatttggatttttggggttacatatagcaaaattctctg-aaaggcctaaactttgacatgataaaggaatgggctgaaatctg 169  Q
    |||||||||||||||| ||||||||||   ||| || |||||| |||| | |||| ||||||| ||||||||||| |||||||||||||| ||| |||||    
T  3762424 ggggtgtatatagaaatatttggatttcaaggggtatatatagaaaaaatttctgcaaaggcccaaactttgacaagataaaggaatgggttgacatctg 3762523  T
Q  170 ttaatgtttttgac----------agatttactatatatatcccatgtggtacaaatatttctatatacactctcctataannnnnnnnggttgttctta 259  Q
    ||| | |||||| |          |||||| |||||||||||  ||||   ||||||||||||||| |||| |||||||||        ||||||||||     
T  3762524 ttagtatttttggcccttttagtgagatttgctatatatatcatatgtaacacaaatatttctatacacaccctcctataaaaaaatttggttgttcttg 3762623  T
Q  260 ataatatgctcaaaaatttattatcgaagaaa 291  Q
    |||||||||| |||||||||||||||||||||    
T  3762624 ataatatgcttaaaaatttattatcgaagaaa 3762655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 71 - 291
Target Start/End: Original strand, 39905955 - 39906184
Alignment:
Q  71 ggggtgtatatagaaacatttggatttttggggttacatatagcaaaattctctg-aaaggcctaaactttgacatgataaaggaatgggctgaaatctg 169  Q
    ||||||||| |||||| ||||||||||| |||| || ||||||||| |||||||| ||||||  |||||||||||||||| || ||||| ||||||||||    
T  39905955 ggggtgtatgtagaaatatttggattttggggggtatatatagcaacattctctgaaaaggctcaaactttgacatgatatagaaatggactgaaatctg 39906054  T
Q  170 ttaatgtttttgac---------agatttactatatatatcccatgtggtacaaatatttctatatacactctcctataannnnnnnnggttgttcttaa 260  Q
    || ||||||||| |         |||||| ||||||||||| ||||  | ||||| |||||||||||| | ||| |||||        ||||||||||||    
T  39906055 ttgatgtttttggccctttagtgagatttgctatatatatctcatgcagcacaaa-atttctatataccccctcatataaaaaaatttggttgttcttaa 39906153  T
Q  261 taatatgctcaaaaatttattatcgaagaaa 291  Q
    ||||||| || ||||| ||||||| ||||||    
T  39906154 taatatggtcgaaaatatattatcaaagaaa 39906184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 72 - 300
Target Start/End: Complemental strand, 7264008 - 7263769
Alignment:
Q  72 gggtgtatatagaaacatttggatttttggggttacatatagcaaaattctct-gaaaggcctaaactttgacatgataaaggaatgggctgaaatctgt 170  Q
    |||||| |||||||| ||||||||||| |||| || |||||| ||| ||||||  ||||| | || |||||||||| || || ||||| ||||||||| |    
T  7264008 gggtgtttatagaaatatttggattttagggggtatatatagtaaacttctctaaaaaggtccaatctttgacatgttatagaaatggactgaaatctat 7263909  T
Q  171 taatgttttt----------gacagatttactatatatatcccatgtggtacaaatatttctatatacactctcctataannnnnnnnggttgttcttaa 260  Q
    ||||||||||          |  |||||| ||||||||||||||||  | ||||| |||||||||||||| |||||||||        ||||||||||||    
T  7263908 taatgttttttgccctattagtgagatttgctatatatatcccatgcagcacaaaaatttctatatacaccctcctataaaaaaaattggttgttcttaa 7263809  T
Q  261 taatatgctcaaaaatttattatcgaagaaagtaatgata 300  Q
    ||||||| |  |||||||||||||||||||| || |||||    
T  7263808 taatatgtttgaaaatttattatcgaagaaattagtgata 7263769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 71 - 181
Target Start/End: Original strand, 18327041 - 18327151
Alignment:
Q  71 ggggtgtatatagaaacatttggatttttggggttacatatagcaaaattctctga-aaggcctaaactttgacatgataaaggaatgggctgaaatctg 169  Q
    |||||||||||||||| | ||||||||| |||  |  ||||||||||||||||||| |||| | ||||||||||||||| ||||||||||| ||||||||    
T  18327041 ggggtgtatatagaaatagttggattttggggtgtctatatagcaaaattctctgacaaggaccaaactttgacatgattaaggaatgggc-gaaatctg 18327139  T
Q  170 ttaatgtttttg 181  Q
    ||||||||||||    
T  18327140 ttaatgtttttg 18327151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 192 - 300
Target Start/End: Original strand, 18327212 - 18327320
Alignment:
Q  192 tatatatatcccatgtggtacaaatatttctatatacactctcctataannnnnnnnggttgttcttaataatatgctcaaaaatttattatcgaagaaa 291  Q
    |||||||||||||||| | | ||| |||||||||||||| |||||||||         ||||||||||||||||||||||||||||||||||||||||||    
T  18327212 tatatatatcccatgtagcagaaacatttctatatacaccctcctataaaaaaaattagttgttcttaataatatgctcaaaaatttattatcgaagaaa 18327311  T
Q  292 gtaatgata 300  Q
     | ||||||    
T  18327312 ttgatgata 18327320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 71 - 181
Target Start/End: Original strand, 40971172 - 40971283
Alignment:
Q  71 ggggtgtatatagaaacatttggatttttggggttacatatagcaaaattctctg-aaaggcctaaactttgacatgataaaggaatgggctgaaatctg 169  Q
    ||||| |||||||| | ||||||||||| |||| || |||||| ||||||||||| ||||||| || |||||||||| || || |||||| ||||||||     
T  40971172 ggggtatatatagatatatttggattttagggggtatatatagtaaaattctctgaaaaggcccaatctttgacatgttatagaaatgggttgaaatcta 40971271  T
Q  170 ttaatgtttttg 181  Q
    ||||||||||||    
T  40971272 ttaatgtttttg 40971283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 252 - 300
Target Start/End: Original strand, 40971361 - 40971409
Alignment:
Q  252 tgttcttaataatatgctcaaaaatttattatcgaagaaagtaatgata 300  Q
    ||||||||||||||||||  |||||||||||| ||||||| || |||||    
T  40971361 tgttcttaataatatgcttgaaaatttattattgaagaaattagtgata 40971409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 116; Significance: 5e-59; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 21 - 300
Target Start/End: Complemental strand, 39480680 - 39480388
Alignment:
Q  21 acggcctagggcccatgccagtagggggcccaaaagnnnnnnnnnaaggtggggtgtatatagaaacatttggatttttggggttacatatagcaaaatt 120  Q
    ||||||||||||||||||| ||||||||||||||||         |  || ||| ||||||||||| ||||||||||| |||| || |||||||||||||    
T  39480680 acggcctagggcccatgccggtagggggcccaaaagtttttttaaagtgtagggggtatatagaaatatttggattttggggggtatatatagcaaaatt 39480581  T
Q  121 ctctgaaa-ggcctaaactttgacatgataaaggaatgggctgaaatctgttaatgttttt----------gacagatttac--tatatatatcccatgt 207  Q
    |||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||          |  ||||||||  ||||||||||||||||    
T  39480580 ctctgaaaaggcccaaactttgacatgataaaggaatgggctgaaatctgttaatgttttttgcccttttagtgagatttactatatatatatcccatgt 39480481  T
Q  208 ggtacaaatatttctatatacactctcctataannnnnnnnggttgttcttaataatatgctcaaaaatttattatcgaagaaagtaatgata 300  Q
    || |||||||||||||||||||| |||||| ||        |||||||||||||||||||||||||||||||||||| ||||||  |||||||    
T  39480480 ggcacaaatatttctatatacaccctcctacaattttttttggttgttcttaataatatgctcaaaaatttattatcaaagaaataaatgata 39480388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 72 - 300
Target Start/End: Original strand, 36213464 - 36213700
Alignment:
Q  72 gggtgtatatagaaacatttggatttttggggttacatatagcaaaattctctgaaa-ggcctaaactttgacatgataaaggaatgggctgaaatctgt 170  Q
    ||||||||||||||| ||||||||||| | ||| | |||||| |||||| ||||||| |||| |||||||||||||||||||||||||||||||||||||    
T  36213464 gggtgtatatagaaatatttggattttggaggt-atatatagtaaaattatctgaaaaggcccaaactttgacatgataaaggaatgggctgaaatctgt 36213562  T
Q  171 taatgtttttgac----------agatttactatatatatcccatgtggtacaaatatttctatatacactctcctataannnnnnnnggttgttcttaa 260  Q
    ||||||||||| |          ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||          ||||||||||    
T  36213563 taatgtttttggcccttttagtgagatttattatatatatcccatgtggtacaaatatttctatatacaccctcctataatttttttt--ttgttcttaa 36213660  T
Q  261 taatatgctcaaaaatttattatcgaagaaagtaatgata 300  Q
    |||||||||||||| |||||||||||||||| ||||||||    
T  36213661 taatatgctcaaaattttattatcgaagaaattaatgata 36213700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 72 - 283
Target Start/End: Complemental strand, 6261995 - 6261771
Alignment:
Q  72 gggtgtatatagaaacatttggatttttggggttacatatagcaaaattctctgaaa--ggcctaaactttgacatgataaaggaatgggctgaaatctg 169  Q
    ||||||||||||||| ||| ||||||| | || || ||||||  |||||||||||||  |||| ||||||||||||||||||||||||||||||||||||    
T  6261995 gggtgtatatagaaatattaggattttggagggtatatatagtcaaattctctgaaaaaggcccaaactttgacatgataaaggaatgggctgaaatctg 6261896  T
Q  170 ttaatgtttttgac----------agatttactatatatatcccatgtggtacaaatatttctatatacactctcctataa-nnnnnnnnggttgttctt 258  Q
    |||||||||||| |          |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||          |||||||||    
T  6261895 ttaatgtttttggcccttttagtgagatttactatatatatcccatgtggcacaaatatttctatatacaccctcctataattttttttttgttgttctt 6261796  T
Q  259 aataatatgctcaaaaatttattat 283  Q
    |||||||||||||||||||||||||    
T  6261795 aataatatgctcaaaaatttattat 6261771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 72 - 291
Target Start/End: Complemental strand, 10095400 - 10095168
Alignment:
Q  72 gggtgtatatagaaacatttggatttttggggttacatatagcaaaattctctg-aaaggcctaaactttgacatgataaaggaatgggctgaaatctgt 170  Q
    ||||||||||||||| |||||||||| ||||  || |||||| || |||||||| ||||| | |||||||||||||||||| ||||||||||| ||||||    
T  10095400 gggtgtatatagaaatatttggatttctgggaatatatatagaaacattctctgcaaaggtccaaactttgacatgataaatgaatgggctgacatctgt 10095301  T
Q  171 taatgtttttgac----------agatttac--tatatatatcccatgtggtacaaatatttctatatacactctcctataannnnnnnnggttgttctt 258  Q
    || | |||||| |          |||||| |  ||||||||||||||||   |||||||||||||||| ||| |||||||||        ||||||||||    
T  10095300 tagtatttttggcctttttagtgagatttgctatatatatatcccatgtaacacaaatatttctatatgcaccctcctataaaaaaatttggttgttctt 10095201  T
Q  259 aataatatgctcaaaaatttattatcgaagaaa 291  Q
     || |||||||||||||| ||||||||||||||    
T  10095200 gattatatgctcaaaaatgtattatcgaagaaa 10095168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 126 - 291
Target Start/End: Complemental strand, 7414064 - 7413889
Alignment:
Q  126 aaaggcctaaactttgacatgataaaggaatgggctgaaatctgttaatgtttttgac----------agatttactatatatatcccatgtggtacaaa 215  Q
    ||||||||||||||||||||||||||| |||||||||| |||||||| | |||||| |          |||||| ||||||||||||||| |   |||||    
T  7414064 aaaggcctaaactttgacatgataaagaaatgggctgacatctgttagtatttttggcccttttagtgagatttgctatatatatcccatataacacaaa 7413965  T
Q  216 tatttctatatacactctcctataannnnnnnnggttgttcttaataatatgctcaaaaatttattatcgaagaaa 291  Q
    ||||||||||||||| ||| |||||        |||||||||| |||||||||| ||||||||| |||||||||||    
T  7413964 tatttctatatacaccctcttataaaaaaatttggttgttcttcataatatgctaaaaaatttactatcgaagaaa 7413889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 126 - 291
Target Start/End: Complemental strand, 7460145 - 7459970
Alignment:
Q  126 aaaggcctaaactttgacatgataaaggaatgggctgaaatctgttaatgtttttgac----------agatttactatatatatcccatgtggtacaaa 215  Q
    ||||||||||||||||||||||||||| |||||||||| |||||||| | |||||| |          |||||| ||||||||||||||| |   |||||    
T  7460145 aaaggcctaaactttgacatgataaagaaatgggctgacatctgttagtatttttggcccttttagtgagatttgctatatatatcccatataacacaaa 7460046  T
Q  216 tatttctatatacactctcctataannnnnnnnggttgttcttaataatatgctcaaaaatttattatcgaagaaa 291  Q
    ||||||||||||||| ||| |||||        |||||||||| |||||||||| ||||||||| |||||||||||    
T  7460045 tatttctatatacaccctcttataaaaaaatttggttgttcttcataatatgctaaaaaatttactatcgaagaaa 7459970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 186 - 291
Target Start/End: Original strand, 52458870 - 52458974
Alignment:
Q  186 atttactatatatatcccatgtggtacaaatatttctatatacactctcctataannnnnnnnggttgttcttaataatatgctcaaaaatttattatcg 285  Q
    |||| |||||||||||||||||   ||||| |||||||||||||| |||||||||        |||||||||||||||| ||||||||||||||| ||||    
T  52458870 atttgctatatatatcccatgtatcacaaacatttctatatacaccctcctataataaaatt-ggttgttcttaataatgtgctcaaaaatttatcatcg 52458968  T
Q  286 aagaaa 291  Q
    ||||||    
T  52458969 aagaaa 52458974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 186 - 291
Target Start/End: Original strand, 52460127 - 52460231
Alignment:
Q  186 atttactatatatatcccatgtggtacaaatatttctatatacactctcctataannnnnnnnggttgttcttaataatatgctcaaaaatttattatcg 285  Q
    |||| |||||||||||||||||   ||||| |||||||||||||| |||||||||        |||||||||||||||| ||||||||||||||| ||||    
T  52460127 atttgctatatatatcccatgtatcacaaacatttctatatacaccctcctataataaaatt-ggttgttcttaataatgtgctcaaaaatttatcatcg 52460225  T
Q  286 aagaaa 291  Q
    ||||||    
T  52460226 aagaaa 52460231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 72 - 181
Target Start/End: Complemental strand, 55520402 - 55520293
Alignment:
Q  72 gggtgtatatagaaacatttggatttttggggttacatatagcaaaattctctgaaaggcctaaactttgacatgataaaggaatgggctgaaatctgtt 171  Q
    ||||||||||||||| |||||  ||||||||| |||||||| |||| ||| |||||||||| |||| |||||||||| || || ||| |||||   ||||    
T  55520402 gggtgtatatagaaatatttgattttttggggatacatataacaaagttcactgaaaggcccaaacattgacatgatgaaagactggactgaagcttgtt 55520303  T
Q  172 aatgtttttg 181  Q
    ||| ||||||    
T  55520302 aatatttttg 55520293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 250 - 300
Target Start/End: Complemental strand, 6261768 - 6261718
Alignment:
Q  250 gttgttcttaataatatgctcaaaaatttattatcgaagaaagtaatgata 300  Q
    |||||||||||||||||||||||||||||| ||||||| ||| ||||||||    
T  6261768 gttgttcttaataatatgctcaaaaatttactatcgaataaattaatgata 6261718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 75 - 180
Target Start/End: Original strand, 52460003 - 52460111
Alignment:
Q  75 tgtatatagaaacatttggatttttggg-gttacatatagcaaaattctctgaaag---gcctaaactttgacatgataaaggaatgggctgaaatctgt 170  Q
    |||||||||||| ||||| ||||||||| | || ||||||||||||||||| |||    ||  |||  |||||||||| ||||  |||||||||||||||    
T  52460003 tgtatatagaaatatttg-atttttgggagctatatatagcaaaattctctaaaaaaaagctcaaatattgacatgatgaagggctgggctgaaatctgt 52460101  T
Q  171 taatgttttt 180  Q
    ||||||||||    
T  52460102 taatgttttt 52460111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 180
Target Start/End: Original strand, 52458746 - 52458854
Alignment:
Q  75 tgtatatagaaacatttggatttttggggttacatatagcaaaattctctgaaag---gcctaaactttgacatgataaaggaatgggctgaaatctgtt 171  Q
    |||||||||||| |||| | |||| || | || ||||||||||||||||| |||    ||  |||  |||||||||| ||||  ||||||||||||||||    
T  52458746 tgtatatagaaatattttgtttttgggagctatatatagcaaaattctctaaaaaaaagctcaaatattgacatgatgaagggctgggctgaaatctgtt 52458845  T
Q  172 aatgttttt 180  Q
    |||||||||    
T  52458846 aatgttttt 52458854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 180
Target Start/End: Original strand, 51758214 - 51758287
Alignment:
Q  108 atatagcaaaattctctgaaaggcct-aaactttgacatgataaaggaatgggctgaaatctgttaatgttttt 180  Q
    ||||| |||| ||||||||||||||  |||| ||||||| || |||| ||||| |||| |||||||||||||||    
T  51758214 atataacaaagttctctgaaaggccccaaacattgacataatgaagggatgggttgaagtctgttaatgttttt 51758287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 291
Target Start/End: Original strand, 51758369 - 51758410
Alignment:
Q  250 gttgttcttaataatatgctcaaaaatttattatcgaagaaa 291  Q
    ||||||||||||||| |||  |||||||||||||||||||||    
T  51758369 gttgttcttaataatgtgccaaaaaatttattatcgaagaaa 51758410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 180
Target Start/End: Complemental strand, 23936149 - 23936039
Alignment:
Q  71 ggggtgtatatagaaacatttggatttttggggttacatatagcaaaattctctgaaa--ggcctaaactttgacatgataaaggaatgggctgaaatct 168  Q
    |||||||||||||||| |||| | ||||| |||  | |||||||||||||||||||||  | ||  ||| |||||||||| ||||| || |||||||  |    
T  23936149 ggggtgtatatagaaatattttgtttttttgggg-atatatagcaaaattctctgaaaaggtccctaacattgacatgatgaaggactgagctgaaacat 23936051  T
Q  169 gttaatgttttt 180  Q
    |||| |||||||    
T  23936050 gttattgttttt 23936039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 98; Significance: 3e-48; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 71 - 300
Target Start/End: Original strand, 19156820 - 19157060
Alignment:
Q  71 ggggtgtatatagaaacatttggatttttggggttacatatagcaaaattctctg-aaaggcctaaactttgacatgataaaggaatgggctgaaatctg 169  Q
    |||||||||||||||| ||||||||||  |||| || |||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||| |||||    
T  19156820 ggggtgtatatagaaatatttggatttcgggggatatatatagaaaaattctctgtaaaggcccaaactttgacatgataaaggaatgggctgacatctg 19156919  T
Q  170 ttaatgtttttgac----------agatttactatatatatcccatgtggtacaaatatttctatatacactctcctataannnnnnnnggttgttctta 259  Q
    ||| | |||||| |          |||||| |||||||||||||||||   |||||||||||||||||||| |||||||||        ||||||||||     
T  19156920 ttagtatttttggcccttttagtgagatttgctatatatatcccatgtaacacaaatatttctatatacaccctcctataaaaaaatttggttgttcttg 19157019  T
Q  260 ataatatgctcaaaaatttattatcgaagaaagtaatgata 300  Q
    |||||||||||||||||||||||||||||||| | ||||||    
T  19157020 ataatatgctcaaaaatttattatcgaagaaattgatgata 19157060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 71 - 291
Target Start/End: Complemental strand, 53077344 - 53077113
Alignment:
Q  71 ggggtgtatatagaaacatttggatttttggggttacatatagcaaaattctctg-aaaggcctaaactttgacatgataaaggaatgggctgaaatctg 169  Q
    |||||||||||||||| ||||||||||  | || || |||||| ||||||||||  ||||||| ||||| |||||||||||||||||| ||||| |||||    
T  53077344 ggggtgtatatagaaatatttggatttcggagggtatatatagaaaaattctcttcaaaggcccaaactctgacatgataaaggaatgagctgatatctg 53077245  T
Q  170 ttaatgtttttgac----------agatttactatatatatcccatgtggtacaaatatttctatatacactctcctataannnnnnnnggttgttctta 259  Q
    ||| | |||||| |          |||||| |||||||||||||||||   |||||  ||||||||||||| |||||||||        ||||||||||     
T  53077244 ttagtatttttggctcttttagtgagatttgctatatatatcccatgtaacacaaaattttctatatacaccctcctataaaaaaatttggttgttcttg 53077145  T
Q  260 ataatatgctcaaaaatttattatcgaagaaa 291  Q
    ||||||||||||||||||||||||||||||||    
T  53077144 ataatatgctcaaaaatttattatcgaagaaa 53077113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 71 - 291
Target Start/End: Original strand, 15760586 - 15760817
Alignment:
Q  71 ggggtgtatatagaaacatttggatttttggggttacatatagcaaaattctctg-aaaggcctaaactttgacatgataaaggaatgggctgaaatctg 169  Q
    |||||||||||||||| ||||||||||  |||| ||  ||||| || |||||||| ||||||| ||||||||||||| ||||||||||| |||| |||||    
T  15760586 ggggtgtatatagaaatatttggatttcggggggtatgtatagaaatattctctgcaaaggcccaaactttgacatgttaaaggaatggactgacatctg 15760685  T
Q  170 ttaatgttttt----------gacagatttactatatatatcccatgtggtacaaatatttctatatacactctcctataannnnnnnnggttgttctta 259  Q
    ||| | |||||          |  |||||| |||||||||||||||||   ||||| |||||||||||||| |||||||||        ||||| ||||     
T  15760686 ttagtattttttgcccttttagtgagatttgctatatatatcccatgtaacacaaaaatttctatatacaccctcctataaaaaaatttggttgatcttg 15760785  T
Q  260 ataatatgctcaaaaatttattatcgaagaaa 291  Q
    ||||||||||||||||||||||||||||||||    
T  15760786 ataatatgctcaaaaatttattatcgaagaaa 15760817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 71 - 300
Target Start/End: Original strand, 52447869 - 52448110
Alignment:
Q  71 ggggtgtatatagaaacatttggatttttggggttacatatagcaaaattctctg-aaaggcctaaactttgacatgataaaggaatgggctgaaatctg 169  Q
    ||||||| |||||||| ||||||||||| |||| || |||||| ||||||||||| ||||||| || |||||||||| || || |||||||||||||||     
T  52447869 ggggtgtttatagaaatatttggattttagggggtatatatagtaaaattctctgaaaaggcccaatctttgacatgttatagaaatgggctgaaatcta 52447968  T
Q  170 ttaa-tgttttt----------gacagatttactatatatatcccatgtggtacaaatatttctatatacactctcctataannnnnnnnggttgttctt 258  Q
    |||| |||||||          |  ||||| ||||||||||||| |||  | ||||| |||||||||||||| |||||||||        || |||||||    
T  52447969 ttaattgttttttgccctattagtgagattcactatatatatcctatgcagcacaaaaatttctatatacaccctcctataattttttttggatgttctt 52448068  T
Q  259 aataatatgctcaaaaatttattatcgaagaaagtaatgata 300  Q
    |||||||||||  |||||||||||||||||||| || |||||    
T  52448069 aataatatgcttgaaaatttattatcgaagaaattagtgata 52448110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 108 - 291
Target Start/End: Complemental strand, 10994489 - 10994295
Alignment:
Q  108 atatagcaaaattctctg-aaaggcctaaactttgacatgataaaggaatgggctgaaatctgttaatgtttttgac----------agatttactatat 196  Q
    |||||| |||||| |||| ||||||| ||||||| |||||||||||||||||||||| || ||||||| |||||| |          |||||| ||||||    
T  10994489 atatagaaaaattatctgcaaaggcccaaactttaacatgataaaggaatgggctgacatttgttaatatttttggctcttttagtgagatttgctatat 10994390  T
Q  197 atatcccatgtggtacaaatatttctatatacactctcctataannnnnnnnggttgttcttaataatatgctcaaaaatttattatcgaagaaa 291  Q
    |||||||||||   ||||| |||||||||||||| |||||||||        ||||||||||  ||||| |||||||||||||||||||||||||    
T  10994389 atatcccatgtaacacaaaaatttctatatacaccctcctataaaaaaatttggttgttcttggtaatacgctcaaaaatttattatcgaagaaa 10994295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 21 - 291
Target Start/End: Complemental strand, 27941942 - 27941661
Alignment:
Q  21 acggcctagggcccatgccagtagggggcccaaaagnnnnnnnnnaaggt---ggggtgtatatagaaacatttggatttttggggttacatatagcaaa 117  Q
    ||||||||||||||||||| |||||||||||||||          |||||   |||||||||||||||| ||||||||||  |||| || |||| | ||     
T  27941942 acggcctagggcccatgccggtagggggcccaaaa---agaatttaaggtaagggggtgtatatagaaatatttggatttcggggggtatatattgaaat 27941846  T
Q  118 attctctg-aaaggcctaaactttgacatgataaaggaatgggctgaaatctgttaatgtttttgac----------agatttactatatatatcccatg 206  Q
     ||||||| ||||||| |||||||||||||||||||||||| ||||| ||| |||| | |||||| |          |||||| ||||||||||||||||    
T  27941845 tttctctgcaaaggcccaaactttgacatgataaaggaatgagctgacatcagttagtatttttggcccttttagtgagatttgctatatatatcccatg 27941746  T
Q  207 tggtacaaatatttctatatacactctcctataannnnnnnnggttgttcttaataatatgctcaaaaatttattatcgaagaaa 291  Q
    |   ||||| |  | ||||||||| ||||| |||        |||||||||| ||||||||||||||||||||||||||||||||    
T  27941745 taacacaaaaaaatttatatacaccctcctgtaaaaaaatttggttgttcttgataatatgctcaaaaatttattatcgaagaaa 27941661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 71 - 291
Target Start/End: Original strand, 25071364 - 25071601
Alignment:
Q  71 ggggtgtatatagaaacatttggatttttggggttacatatagcaaaattctctg-aaaggcctaaactttgacatgataaaggaatgggctgaaatctg 169  Q
    |||||||||||||||| ||||||||||  |||||   |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||    
T  25071364 ggggtgtatatagaaatatttggatttagggggtgt-atatag-aaaattctctgcaaaggcctaaactttgacatgataaaggaatgggctgacatctg 25071461  T
Q  170 ttaatgtttttgac----------agatttactatatata--------tcccatgtggtacaaatatttctatatacactctcctataannnnnnnnggt 251  Q
    ||| | |||| | |          |||||| | |||||||        ||||||||   ||||| |||||||||||||| |||||||||        |||    
T  25071462 ttagtattttcggcccttttagtgagatttgccatatatatcccatattcccatgtaacacaaaaatttctatatacaccctcctataaaaaaaattggt 25071561  T
Q  252 tgttcttaataatatgctcaaaaatttattatcgaagaaa 291  Q
    ||||||| ||||||||||||||||||||||||||||||||    
T  25071562 tgttcttgataatatgctcaaaaatttattatcgaagaaa 25071601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 185 - 300
Target Start/End: Original strand, 1698271 - 1698386
Alignment:
Q  185 gatttactatatatatcccatgtggtacaaatatttctatatacactctcctataannnnnnnnggttgttcttaataatatgctcaaaaatttattatc 284  Q
    ||||| ||||||||| ||||||| | ||||| | ||||||||||||||||||||||        ||||||| ||||||||||||| || |||||||||||    
T  1698271 gatttcctatatataccccatgtagcacaaaaaattctatatacactctcctataaaaaaaattggttgttattaataatatgctaaagaatttattatc 1698370  T
Q  285 gaagaaagtaatgata 300  Q
    ||||||| || |||||    
T  1698371 gaagaaattagtgata 1698386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 184 - 300
Target Start/End: Complemental strand, 24928103 - 24927987
Alignment:
Q  184 agatttactatatatatcccatgtggtacaaatatttctatatacactctcctataannnnnnnnggttgttcttaataatatgctcaaaaatttattat 283  Q
    |||||| ||||||||||||||||  | |||||||||||||||||||| |||||||||        || | | ||||||||||||||  ||||||||||||    
T  24928103 agatttgctatatatatcccatgcagcacaaatatttctatatacaccctcctataaaaaattttggctttacttaataatatgcttgaaaatttattat 24928004  T
Q  284 cgaagaaagtaatgata 300  Q
    |||||||| || |||||    
T  24928003 cgaagaaattagtgata 24927987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 123
Target Start/End: Complemental strand, 24928218 - 24928166
Alignment:
Q  71 ggggtgtatatagaaacatttggatttttggggttacatatagcaaaattctc 123  Q
    |||||||||||||||| ||||||||||| |||| || |||||| |||||||||    
T  24928218 ggggtgtatatagaaatatttggattttagggggtatatatagtaaaattctc 24928166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 55
Target Start/End: Original strand, 19156770 - 19156804
Alignment:
Q  21 acggcctagggcccatgccagtagggggcccaaaa 55  Q
    ||||||||||||||||||| |||||||||||||||    
T  19156770 acggcctagggcccatgccggtagggggcccaaaa 19156804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 93; Significance: 3e-45; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 71 - 291
Target Start/End: Original strand, 1422682 - 1422913
Alignment:
Q  71 ggggtgtatatagaaacatttggatttttggggttacatatagcaaaattctctgaaa-ggcctaaactttgacatgataaaggaatgggctgaaatctg 169  Q
    ||||||||| |||||| ||||||||||| ||| | | ||||||||||||||||||||| |||| |||||||||||||||| |||||| ||||||||||||    
T  1422682 ggggtgtatttagaaatatttggattttggggataatatatagcaaaattctctgaaaaggcccaaactttgacatgatataggaattggctgaaatctg 1422781  T
Q  170 ttaatgtttttgac----------agatttactatatatatcccatgtggtacaaatatttctatatacactctcctataannnnnnnnggttgttctta 259  Q
    |||||||||||| |          |||||| ||||||||||||||||  | |||||  ||||||||||||| |||||||||        |||||||||||    
T  1422782 ttaatgtttttggcctttttagtgagatttgctatatatatcccatgcagcacaaaactttctatatacaccctcctataaatttttttggttgttctta 1422881  T
Q  260 ataatatgctcaaaaatttattatcgaagaaa 291  Q
    ||||||||||| ||||||||||||||||||||    
T  1422882 ataatatgctcgaaaatttattatcgaagaaa 1422913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 71 - 291
Target Start/End: Original strand, 1603097 - 1603328
Alignment:
Q  71 ggggtgtatatagaaacatttggatttttggggttacatatagcaaaattctctg-aaaggcctaaactttgacatgataaaggaatgggctgaaatctg 169  Q
    |||||||||||||||| ||||||||||  |||| || |||||| ||||||||||  ||||||| |||||||||||||||||||||||||||||| |||||    
T  1603097 ggggtgtatatagaaatatttggatttcgggggatatatatagaaaaattctctataaaggcccaaactttgacatgataaaggaatgggctgacatctg 1603196  T
Q  170 ttaatgtttttgac----------agatttactatatatatcccatgtggtacaaatatttctatatacactctcctataannnnnnnnggttgttctta 259  Q
    ||| | |||||| |          |||||| |||||||||||||||||   |||||||||||||||||||| |||||||||        ||||||||||     
T  1603197 ttagtatttttggcccttttagtgagattttctatatatatcccatgtaacacaaatatttctatatacaccctcctataaaaaaatttggttgttcttg 1603296  T
Q  260 ataatatgctcaaaaatttattatcgaagaaa 291  Q
    |||||||||| |||||||||||||||||||||    
T  1603297 ataatatgcttaaaaatttattatcgaagaaa 1603328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 71 - 291
Target Start/End: Complemental strand, 22012491 - 22012260
Alignment:
Q  71 ggggtgtatatagaaacatttggatttttggggttacatatagcaaaattctctg-aaaggcctaaactttgacatgataaaggaatgggctgaaatctg 169  Q
    |||||||||||||||| ||||||||||  |||| || |||||| ||  ||||||| ||||||| |||||||||||||||||||||||||||||| |||||    
T  22012491 ggggtgtatatagaaatatttggatttcagggggtatatatagaaattttctctgcaaaggcccaaactttgacatgataaaggaatgggctgacatctg 22012392  T
Q  170 ttaatgtttttgac----------agatttactatatatatcccatgtggtacaaatatttctatatacactctcctataannnnnnnnggttgttctta 259  Q
    ||| | |||||| |          |||||| |||||||||||||||||   ||||| |||||||||||||| ||||| |||        ||||||||||     
T  22012391 ttagtatttttggcctttttagtgagatttgctatatatatcccatgtaacacaaaaatttctatatacaccctcctgtaaaaaaatttggttgttcttg 22012292  T
Q  260 ataatatgctcaaaaatttattatcgaagaaa 291  Q
    ||||||||||||||||||||||||||||||||    
T  22012291 ataatatgctcaaaaatttattatcgaagaaa 22012260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 72 - 291
Target Start/End: Original strand, 1131500 - 1131731
Alignment:
Q  72 gggtgtatatagaaacatttggatttttggggt-tacatatagcaaaattctctgaaa-ggcctaaactttgacatgataaaggaatgggctgaaatctg 169  Q
    ||||||||||||||| |||||||| || ||||  |   ||||| ||| |||||||||| |||| || |||| || ||||| |||||||||||||| ||||    
T  1131500 gggtgtatatagaaatatttggatattgggggggtgtgtatagaaaatttctctgaaaaggcccaatctttaacgtgatataggaatgggctgaattctg 1131599  T
Q  170 ttaatgtttttgac----------agatttactatatatatcccatgtggtacaaatatttctatatacactctcctataannnnnnnnggttgttctta 259  Q
    ||||||||||||||          |||||| ||||||||||||||||  | ||||| |||||||||||||| |||||||||        |||||||||||    
T  1131600 ttaatgtttttgacccttttagagagatttgctatatatatcccatgcagcacaaaaatttctatatacaccctcctataaaaaaaattggttgttctta 1131699  T
Q  260 ataatatgctcaaaaatttattatcgaagaaa 291  Q
    ||||||||||| ||||||||||||||||||||    
T  1131700 ataatatgctcgaaaatttattatcgaagaaa 1131731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 74 - 291
Target Start/End: Original strand, 34043268 - 34043502
Alignment:
Q  74 gtgtatatagaaacatttggatttttggggttacatatagcaaaattctctg-aaaggcctaaactttgacatgataaaggaatgggctgaaatctgtta 172  Q
    ||||||||||||| ||||||||||  ||||||| |||||| ||||||||||| ||||||| ||||||||||||||||||| |||||| ||| ||||||||    
T  34043268 gtgtatatagaaatatttggatttcgggggttatatatagaaaaattctctgtaaaggcccaaactttgacatgataaagaaatgggttgacatctgtta 34043367  T
Q  173 atgttttt----------gacagatttac------tatatatatcccatgtggtacaaatatttctatatacactctcctataannnnnnnnggttgttc 256  Q
     | |||||          |  |||||| |      ||||||||||||||||   |||||||||||||||||||| |||||||||        ||||||||    
T  34043368 gtatttttagccattttagtgagatttgctatatatatatatatcccatgtaacacaaatatttctatatacaccctcctataaatttttttggttgttc 34043467  T
Q  257 ttaataatatgctcaaaaatttattatcgaagaaa 291  Q
    || ||||||||||||||||||||||||||||||||    
T  34043468 ttgataatatgctcaaaaatttattatcgaagaaa 34043502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 74 - 291
Target Start/End: Original strand, 18675083 - 18675311
Alignment:
Q  74 gtgtatatagaaacatttggatttttggggttacatatagcaaaattctctgaaa-ggcctaaactttgacatgataaaggaatgggctgaaatctgtta 172  Q
    ||||||||||||| ||||  ||||| |||  || |||||||||| |||||||||| |||| ||| |||||||||||| |||||| |||||||||||||||    
T  18675083 gtgtatatagaaatatttaaattttggggaatatatatagcaaacttctctgaaaaggcccaaattttgacatgatataggaattggctgaaatctgtta 18675182  T
Q  173 atgtttttgac----------agatttactatatatatcccatgtggtacaaatatttctatatacactctcctataannnnnnnnggttgttcttaata 262  Q
    ||||||||| |          |||||| |||||||||||| |||  ||||||| |||||||||||||  ||||| |||        ||||||||||||||    
T  18675183 atgtttttggcccttttagtgagatttgctatatatatcctatgcagtacaaaaatttctatatacatcctcctgtaaaacaatttggttgttcttaata 18675282  T
Q  263 atatgctcaaaaatttattatcgaagaaa 291  Q
    |||||||| |||||||||  |||||||||    
T  18675283 atatgctcgaaaatttatcgtcgaagaaa 18675311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 73 - 230
Target Start/End: Original strand, 21442480 - 21442648
Alignment:
Q  73 ggtgtatatagaaacatttggatttttggggttacatatagcaaaattctctg-aaaggcctaaactttgacatgataaaggaatgggctgaaatctgtt 171  Q
    |||||||||||||| ||||||||||  |||| || |||||| || |||||||| ||||||| |||||||||||||||||||||||||||||| |||||||    
T  21442480 ggtgtatatagaaatatttggatttcgggggatatatatagaaacattctctgcaaaggcccaaactttgacatgataaaggaatgggctgacatctgtt 21442579  T
Q  172 aatgtttttgac----------agatttactatatatatcccatgtggtacaaatatttctatatacac 230  Q
    | | |||||| |          |||||| |||||||||||||||||   ||||||||||||||||||||    
T  21442580 agtatttttggcccttttagtgagatttgctatatatatcccatgtaacacaaatatttctatatacac 21442648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 73 - 300
Target Start/End: Complemental strand, 26213238 - 26213000
Alignment:
Q  73 ggtgtatatagaaacatttggatttttggggttacatatagcaaaattctctgaaagg--cctaaactttgacatgataaaggaatgggctgaaatctgt 170  Q
    |||||||||||||| ||||   |||| |||| || ||||||||||||||||||||| |  || |||| |||||||||||||||  || ||||||||||||    
T  26213238 ggtgtatatagaaatatttaatttttagggggtatatatagcaaaattctctgaaaagaccccaaacattgacatgataaagggctgagctgaaatctgt 26213139  T
Q  171 taatgtttttgac----------agatttactatatatatcccatgtggtacaaatatttctatatacactctcctataannnnnnnnggttgttcttaa 260  Q
    |||| |||||| |           ||||| ||||||||||||||||| |||||||||||||||||||||| || ||||||        || | ||||| |    
T  26213138 taatatttttggcccgtctggcgcgatttgctatatatatcccatgtagtacaaatatttctatatacaccctactataa-aaaaattggctattcttga 26213040  T
Q  261 taatatgctcaaaaatttattatcgaagaaagtaatgata 300  Q
    |||||||||||||| |||||||||||||||| | ||||||    
T  26213039 taatatgctcaaaattttattatcgaagaaattgatgata 26213000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 71 - 300
Target Start/End: Original strand, 20990181 - 20990404
Alignment:
Q  71 ggggtgtatatagaaacatttggatttttggggttacatatagcaaaattctctg-aaaggcctaaactttgacatgataaaggaatgggctgaaatctg 169  Q
    ||||||| |||||||| ||||||||||| |||| || |||||| || |||||||| ||||||| || |||||||||| || || |||||||||||||||     
T  20990181 ggggtgtttatagaaatatttggattttagggggtatatatagtaacattctctgaaaaggcccaatctttgacatgttatagaaatgggctgaaatct- 20990279  T
Q  170 ttaatgtttttgacagatttactatatatatcccatgtggtacaaatatttctatatacactctcctataannnnnnnnggttgttcttaataatatgct 269  Q
           ||| |  |||||  |||||||||| |||||  | ||||| ||||||||||||||  ||||||||        |||||||||||||||||||||    
T  20990280 ------atttagtgagattcgctatatatattccatgcagcacaaaaatttctatatacaccatcctataaaaaaaattggttgttcttaataatatgct 20990373  T
Q  270 caaaaatttattatcgaagaaagtaatgata 300  Q
      |||||||||||||||||||| || |||||    
T  20990374 tgaaaatttattatcgaagaaattagtgata 20990404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 71 - 300
Target Start/End: Original strand, 26817089 - 26817325
Alignment:
Q  71 ggggtgtatatagaaacatttggatttttggggttacatatagcaaaattctctg-aaaggcct-aaactttgacatgataaaggaatgggctgaaatct 168  Q
    |||||||||||||||| ||||| ||||| |||| || |||||||||||||||||| |||||||| |||| | |||||||| || |  |||||||||||||    
T  26817089 ggggtgtatatagaaatatttg-attttggggggtaaatatagcaaaattctctggaaaggccttaaacatggacatgatgaatggctgggctgaaatct 26817187  T
Q  169 gttaatgtttttgac----------agatttactatatatatcccatgtggtacaaatatttctatatacactctcctataannnnnnnnggttgttctt 258  Q
    ||||||||||||| |           ||||| ||||||||| || |||| | |||||||||||||||||||| || ||| ||          ||||||||    
T  26817188 gttaatgtttttggccattttaacgtgattttctatatatacccaatgtagcacaaatatttctatatacacccttctaaaaaaaaaa----ttgttctt 26817283  T
Q  259 aataatatgctcaaaaatttattatcgaagaaagtaatgata 300  Q
    |||||  |||||||||||||||||||||||||| | ||||||    
T  26817284 aataaggtgctcaaaaatttattatcgaagaaattgatgata 26817325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 74 - 181
Target Start/End: Original strand, 15059899 - 15060007
Alignment:
Q  74 gtgtatatagaaacatttggatttttggggttacatatagcaaaattctctgaaaggcct-aaactttgacatgataaaggaatgggctgaaatctgtta 172  Q
    ||||||||||||| |||||| |||||||||||| |||||| |||||||||| |||  ||| |||| |||||||||| ||||  | ||||||||| |||||    
T  15059899 gtgtatatagaaatatttggttttttggggttatatatagtaaaattctctaaaaaacctcaaacattgacatgatgaagggtttggctgaaatttgtta 15059998  T
Q  173 atgtttttg 181  Q
    | |||||||    
T  15059999 aggtttttg 15060007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 249 - 291
Target Start/End: Complemental strand, 13758965 - 13758923
Alignment:
Q  249 ggttgttcttaataatatgctcaaaaatttattatcgaagaaa 291  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  13758965 ggttgttcttaataatatgctcaaaaatttattatcgaagaaa 13758923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 55
Target Start/End: Original strand, 34043215 - 34043249
Alignment:
Q  21 acggcctagggcccatgccagtagggggcccaaaa 55  Q
    ||||||||||||||||||| |||||||||||||||    
T  34043215 acggcctagggcccatgccggtagggggcccaaaa 34043249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 51
Target Start/End: Complemental strand, 33517009 - 33516977
Alignment:
Q  19 caacggcctagggcccatgccagtagggggccc 51  Q
    ||||||||||||||||||||| |||||||||||    
T  33517009 caacggcctagggcccatgccggtagggggccc 33516977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 89; Significance: 7e-43; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 21 - 291
Target Start/End: Complemental strand, 8389726 - 8389445
Alignment:
Q  21 acggcctagggcccatgccagtagggggcccaaaagnnnnnnnnnaaggt---ggggtgtatatagaaacatttggatttttggggttacatatagcaaa 117  Q
    ||||||||||||||||||| |||||||||||||||          |||||   |||||||||||||||| ||||||||||  |||| ||  ||||| |||    
T  8389726 acggcctagggcccatgccggtagggggcccaaaa---aatctttaaggtaagggggtgtatatagaaatatttggatttcgggggatatgtatagaaaa 8389630  T
Q  118 attctctg-aaaggcctaaactttgacatgataaaggaatgggctgaaatctgttaatgtttttgac----------agatttactatatatatcccatg 206  Q
    |||||||| ||||||| |||||||||||||||||||||||||||||| |||||||| | |||||| |          | |||| ||||||||||||||||    
T  8389629 attctctgtaaaggcccaaactttgacatgataaaggaatgggctgacatctgttagtatttttggcccttttagtgaaattttctatatatatcccatg 8389530  T
Q  207 tggtacaaatatttctatatacactctcctataannnnnnnnggttgttcttaataatatgctcaaaaatttattatcgaagaaa 291  Q
    |   |||||||||||||||||||| |||||||||        |||||||||| ||||||||||||||||||||||||||||||||    
T  8389529 taacacaaatatttctatatacaccctcctataaaaaaatttggttgttcttgataatatgctcaaaaatttattatcgaagaaa 8389445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 72 - 291
Target Start/End: Complemental strand, 20395162 - 20394931
Alignment:
Q  72 gggtgtatatagaaacatttggatttttggggttacatatagcaaaattctctgaaaggcct-aaactttgacatgataaaggaatgggctgaaatctgt 170  Q
    ||||||||||||||| ||||||||||| ||||| |  |||||||| ||||||||||| |||  ||| |||||||||||| ||||||||||||||||||||    
T  20395162 gggtgtatatagaaatatttggattttgggggt-atgtatagcaacattctctgaaaagccccaaattttgacatgatataggaatgggctgaaatctgt 20395064  T
Q  171 taatg----------tttttgacagatttac--tatatatatcccatgtggtacaaatatttctatatacactctcctataannnnnnnnggttgttctt 258  Q
    |||||          |||| || |||||| |  |||||||||||||||  | |||||||||||||||||||| |||||||||        |||||||| |    
T  20395063 taatgttttcggcctttttagagagatttgctatatatatatcccatgcagcacaaatatttctatatacaccctcctataaaaaaaattggttgttcct 20394964  T
Q  259 aataatatgctcaaaaatttattatcgaagaaa 291  Q
    |||||||||||| ||||||||||||||||||||    
T  20394963 aataatatgctcgaaaatttattatcgaagaaa 20394931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 71 - 300
Target Start/End: Original strand, 18667095 - 18667335
Alignment:
Q  71 ggggtgtatatagaaacatttggatttttggggttacatatagcaaaattctctgaaa-ggcctaaactttgacatgataaaggaatgggctgaaatctg 169  Q
    ||||||| |||||||| ||||||||||| |||| || |||||| || ||||||||||| |||| || |||||||||| || || |||||||||||||||     
T  18667095 ggggtgtttatagaaatatttggattttagggggtatatatagtaacattctctgaaaaggcccaatctttgacatgttatagaaatgggctgaaatcta 18667194  T
Q  170 ttaatgttttt----------gacagatttactatatatatcccatgtggtacaaatatttctatatacactctcctataannnnnnnnggttgttctta 259  Q
    |||||||||||          |  |||||| ||||||||||||||||  | ||||| ||||||||||||||||||||||||        |||| ||||||    
T  18667195 ttaatgttttttgccctattagtgagatttgctatatatatcccatgcagcacaaaaatttctatatacactctcctataaaagaaattggttattctta 18667294  T
Q  260 ataatatgctcaaaaatttattatcgaagaaagtaatgata 300  Q
    ||||||||||  |||||||||||||||||||| || |||||    
T  18667295 ataatatgcttgaaaatttattatcgaagaaattagtgata 18667335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 73 - 180
Target Start/End: Original strand, 43824055 - 43824163
Alignment:
Q  73 ggtgtatatagaaacatttggatttttggggttacatatagcaaaattctctgaaa-ggcctaaactttgacatgataaaggaatgggctgaaatctgtt 171  Q
    |||||||||||||| ||||||||||| |||| || |||||| |  ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||    
T  43824055 ggtgtatatagaaatatttggattttggggggtatatatagaagtattctctgaaaaggcccaaactttgacatgataaaggaatgggctgaaatctgtt 43824154  T
Q  172 aatgttttt 180  Q
    |||||||||    
T  43824155 aatgttttt 43824163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 71 - 291
Target Start/End: Original strand, 4539596 - 4539824
Alignment:
Q  71 ggggtgtatatagaaacatttggatttttggggttacatatagcaaaattctctg-aaaggcctaaactttgacatgataaaggaatgggctgaaatctg 169  Q
    |||||||||||||||| ||||||||||  |||||   |||||| | ||||||||| ||||||| ||||||||||||| |||||||||||||||| |||||    
T  4539596 ggggtgtatatagaaatatttggatttagggggtgt-atatagaataattctctgcaaaggcccaaactttgacatgctaaaggaatgggctgacatctg 4539694  T
Q  170 ttaatgttttt----------gacagatttactatatatatcccatgtggtacaaatatttctatatacactctcctataannnnnnnnggttgttctta 259  Q
    ||| | |||||          |  |||||| |||||||||||||||||   ||| | |||||||||||||| |||||||||        ||||||||||     
T  4539695 ttagtatttttcgcccttttagtgagatttgctatatatatcccatgt--aacacaaatttctatatacaccctcctataaaaaaaattggttgttcttg 4539792  T
Q  260 ataatatgctcaaaaatttattatcgaagaaa 291  Q
    ||||||||||||||||||||||||||||||||    
T  4539793 ataatatgctcaaaaatttattatcgaagaaa 4539824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 71 - 300
Target Start/End: Original strand, 13753842 - 13754082
Alignment:
Q  71 ggggtgtatatagaaacatttggatttttggggttacatatagcaaaattctctg-aaaggcctaaactttgacatgataaaggaatgggctgaaatctg 169  Q
    ||||||| |||||||  |||||||||||||||| || |||||| ||||||||||| ||||||| || |||| ||||| || || |||| ||||||||||     
T  13753842 ggggtgtttatagaagtatttggatttttgggggtatatatagtaaaattctctgaaaaggcccaatctttaacatgttatagaaatgagctgaaatcta 13753941  T
Q  170 ttaatgttttt----------gacagatttactatatatatcccatgtggtacaaatatttctatatacactctcctataannnnnnnnggttgttctta 259  Q
    |||||||||||          |  ||||| |||||||||||||||||  | ||||| |||||||||||||| |||||||||        |||||||||||    
T  13753942 ttaatgttttttgccctattagtgagattcactatatatatcccatgcagcacaaaaatttctatatacaccctcctataaaaaaaattggttgttctta 13754041  T
Q  260 ataatatgctcaaaaatttattatcgaagaaagtaatgata 300  Q
    ||||||||||  ||||||||||||| |||||| || |||||    
T  13754042 ataatatgcttgaaaatttattatcaaagaaaatagtgata 13754082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 71 - 291
Target Start/End: Complemental strand, 31072903 - 31072670
Alignment:
Q  71 ggggtgtatatagaaacatttggatttttggggttacatatagcaaaattctctg-aaaggcctaaactttgacatgataaaggaatgggctgaaatctg 169  Q
    |||||||||||||||| ||||||||||| | || || |||||| || |||||||  ||||||| |||| ||||||||||||||||||||| ||| |||||    
T  31072903 ggggtgtatatagaaatatttggattttggagggtatatatagaaacattctctttaaaggcccaaacattgacatgataaaggaatgggttgatatctg 31072804  T
Q  170 ttaatgtttttgac----------agatttac--tatatatatcccatgtggtacaaatatttctatatacactctcctataannnnnnnnggttgttct 257  Q
    ||| | |||||| |          |||||| |  ||||||||||||||||   |||||  ||||||||||||| |||||||||        |||||||||    
T  31072803 ttagtatttttggcccttttagtgagatttgctatatatatatcccatgtaacacaaaattttctatatacacactcctataaaaaattttggttgttct 31072704  T
Q  258 taataatatgctcaaaaatttattatcgaagaaa 291  Q
    | ||||||||||||||||||||||||||||||||    
T  31072703 tgataatatgctcaaaaatttattatcgaagaaa 31072670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 72 - 300
Target Start/End: Complemental strand, 35478353 - 35478114
Alignment:
Q  72 gggtgtatatagaaacatttggatttttggggttacatatagcaaaattctct-gaaaggcctaaactttgacatgataaaggaatgggctgaaatctgt 170  Q
    |||||| |||||||| ||||||||||| |||| || |||||| ||||||||||  ||||| | || |||||||||| || || ||||| ||||||||| |    
T  35478353 gggtgtttatagaaatatttggattttagggggtatatatagtaaaattctctaaaaaggtccaatctttgacatgttatagaaatggactgaaatctat 35478254  T
Q  171 taatgttttt----------gacagatttactatatatatcccatgtggtacaaatatttctatatacactctcctataannnnnnnnggttgttcttaa 260  Q
    ||||||||||          |  |||||  ||||||||||||||||  | ||||| |||||||||||||| |||||||||        ||||||||||||    
T  35478253 taatgttttttgccctattagtgagattcgctatatatatcccatgcagcacaaaaatttctatatacaccctcctataaaaaaaattggttgttcttaa 35478154  T
Q  261 taatatgctcaaaaatttattatcgaagaaagtaatgata 300  Q
    |||||||||  |||||||||||||||||||| || |||||    
T  35478153 taatatgcttgaaaatttattatcgaagaaattagtgata 35478114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 185 - 300
Target Start/End: Original strand, 44733378 - 44733493
Alignment:
Q  185 gatttactatatatatcccatgtggtacaaatatttctatatacactctcctataannnnnnnnggttgttcttaataatatgctcaaaaatttattatc 284  Q
    ||||| || |||||| |||| || | ||||||||||||||||||||  | ||||||        |||||||||||||||| || | |||||| |||||||    
T  44733378 gatttgctgtatataccccacgtagcacaaatatttctatatacaccatactataaaaagatttggttgttcttaataatgtgttgaaaaatctattatc 44733477  T
Q  285 gaagaaagtaatgata 300  Q
    ||| ||||||||||||    
T  44733478 gaataaagtaatgata 44733493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 249 - 300
Target Start/End: Complemental strand, 28460417 - 28460366
Alignment:
Q  249 ggttgttcttaataatatgctcaaaaatttattatcgaagaaagtaatgata 300  Q
    |||||||||||||||| |||  ||||| ||||||||||||||| ||||||||    
T  28460417 ggttgttcttaataatgtgccaaaaaaattattatcgaagaaattaatgata 28460366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 252 - 291
Target Start/End: Original strand, 43824168 - 43824207
Alignment:
Q  252 tgttcttaataatatgctcaaaaatttattatcgaagaaa 291  Q
    |||||||||||||||| |||||||||||||||| ||||||    
T  43824168 tgttcttaataatatgatcaaaaatttattatcaaagaaa 43824207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 249 - 300
Target Start/End: Original strand, 44733551 - 44733602
Alignment:
Q  249 ggttgttcttaataatatgctcaaaaatttattatcgaagaaagtaatgata 300  Q
    |||||||||||||||| || | ||||||||||||||||| ||| ||||||||    
T  44733551 ggttgttcttaataatgtgttgaaaaatttattatcgaataaattaatgata 44733602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 51
Target Start/End: Complemental strand, 6189811 - 6189781
Alignment:
Q  21 acggcctagggcccatgccagtagggggccc 51  Q
    |||||||||||||||||||||||||||||||    
T  6189811 acggcctagggcccatgccagtagggggccc 6189781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 76; Significance: 4e-35; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 72 - 291
Target Start/End: Complemental strand, 27431166 - 27430936
Alignment:
Q  72 gggtgtatatagaaacatttggatttttggggttacatatagcaaaattctctg-aaaggcctaaactttgacatgataaaggaatgggctgaaatctgt 170  Q
    ||||||||||||||| ||||||||||  || | || |||||| ||||||||||  ||||||| |||||||||||||||||||||||||||||| ||||||    
T  27431166 gggtgtatatagaaatatttggatttcgggagatatatatagaaaaattctcttcaaaggcccaaactttgacatgataaaggaatgggctgacatctgt 27431067  T
Q  171 taatgtttttgac----------agatttactatatatatcccatgtggtacaaatatttctatatacactctcctataannnnnnnnggttgttcttaa 260  Q
    || | |||||| |          ||||||||||||||||||||||||   |||||  ||||||||||||| |||||||||         ||||||||| |    
T  27431066 tagtatttttggcccttttagtgagatttactatatatatcccatgtaacacaaaattttctatatacaccctcctataaaaaaatttagttgttcttga 27430967  T
Q  261 taatatgctcaaaaatttattatcgaagaaa 291  Q
    |||||||||||||| ||||||||||||||||    
T  27430966 taatatgctcaaaagtttattatcgaagaaa 27430936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 71 - 291
Target Start/End: Original strand, 22070230 - 22070461
Alignment:
Q  71 ggggtgtatatagaaacatttggatttttggggttacatatagcaaaattctctg-aaaggcctaaactttgacatgataaaggaatgggctgaaatctg 169  Q
    |||||||||||||||| ||||||||||  |||| |  ||||||  |||||||||| ||||||| |||||||||||||||||||||||||||| | |||||    
T  22070230 ggggtgtatatagaaatatttggatttaggggggtgtatatagacaaattctctgcaaaggcccaaactttgacatgataaaggaatgggctaacatctg 22070329  T
Q  170 ttaatgtttttgac----------agatttactatatatatcccatgtggtacaaatatttctatatacactctcctataannnnnnnnggttgttctta 259  Q
    ||| | ||||||||          |||||| |||||||||| ||||||   ||||| |||||||||||||  |||||||||        ||||||||||     
T  22070330 ttagtatttttgacccttttagtgagatttgctatatatattccatgtaacacaaaaatttctatatacatcctcctataaaaaaatttggttgttcttg 22070429  T
Q  260 ataatatgctcaaaaatttattatcgaagaaa 291  Q
    ||||||| ||||||||||||||||||||||||    
T  22070430 ataatatactcaaaaatttattatcgaagaaa 22070461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 71 - 291
Target Start/End: Complemental strand, 34307823 - 34307592
Alignment:
Q  71 ggggtgtatatagaaacatttggatttttggggttacatatagcaaaattctctg-aaaggcctaaactttgacatgataaaggaatgggctgaaatctg 169  Q
    |||||| ||||||||| ||||||||||  |||| || |||||| | ||||||||  ||||| | |||||||||||||||||||||||||||||| |||||    
T  34307823 ggggtgcatatagaaatatttggatttcggggggtatatatagaagaattctcttcaaaggtccaaactttgacatgataaaggaatgggctgacatctg 34307724  T
Q  170 ttaatgtttttgac----------agatttactatatatatcccatgtggtacaaatatttctatatacactctcctataannnnnnnnggttgttctta 259  Q
    ||| | |||||| |          |||||| |||||||||||||||||   |||||  ||||||||||||| |||||||||        ||||||||||     
T  34307723 ttagtatttttggctcttttagtgagatttgctatatatatcccatgtaacacaaaattttctatatacaccctcctataaaaaaaattggttgttcttg 34307624  T
Q  260 ataatatgctcaaaaatttattatcgaagaaa 291  Q
    ||||||||||||||||||||||||||||||||    
T  34307623 ataatatgctcaaaaatttattatcgaagaaa 34307592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 71 - 291
Target Start/End: Complemental strand, 48596722 - 48596498
Alignment:
Q  71 ggggtgtatatagaaacatttggatttttggggttacatatagcaaaattctctg-aaaggcctaaactttgacatgataaaggaatgggctgaaatctg 169  Q
    |||||||||||||||| ||||||||||  |||| || |||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||| |||||    
T  48596722 ggggtgtatatagaaatatttggatttcaggggatatatatagaaaaattctctgcaaaggcccaaactttgacatgataaaggaatgggctgatatctg 48596623  T
Q  170 ttaatgttttt----------gacagatttactatatatatcccatgtggtacaaatatttctatatacactctcctataannnnnnnnggttgttctta 259  Q
    ||| | |||||          |  ||||||  ||||||||||||||||   |||||||||||  ||||||| |||||||||          ||||||||     
T  48596622 ttagtatttttggtccttttagtgagatttgttatatatatcccatgtaacacaaatatttc--tatacaccctcctataaaaaat-----ttgttcttg 48596530  T
Q  260 ataatatgctcaaaaatttattatcgaagaaa 291  Q
    ||||||||||||||||||||||||||||||||    
T  48596529 ataatatgctcaaaaatttattatcgaagaaa 48596498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 71 - 291
Target Start/End: Original strand, 21906106 - 21906337
Alignment:
Q  71 ggggtgtatatagaaacatttggatttttggggttacatatagcaaaattctctg-aaaggcctaaactttgacatgataaaggaatgggctgaaatctg 169  Q
    |||||||||||| ||  ||||||||||  |||| || |||||| ||||||||||  ||||||| |||||||||||||||||||||||||||||| |||||    
T  21906106 ggggtgtatataaaattatttggatttcggggggtatatatagaaaaattctcttcaaaggcccaaactttgacatgataaaggaatgggctgacatctg 21906205  T
Q  170 ttaatgtttttgac----------agatttactatatatatcccatgtggtacaaatatttctatatacactctcctataannnnnnnnggttgttctta 259  Q
    ||| | |||||| |          ||||||  ||||||||||||||||   |||||  ||||||||||||| ||| |||||        ||||||||||     
T  21906206 ttagtctttttggcccttttagtgagatttgttatatatatcccatgtaacacaaaattttctatatacaccctcatataaaagaatttggttgttcttg 21906305  T
Q  260 ataatatgctcaaaaatttattatcgaagaaa 291  Q
    ||||||||||| ||||||||||||||||||||    
T  21906306 ataatatgctccaaaatttattatcgaagaaa 21906337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 71 - 291
Target Start/End: Original strand, 5049181 - 5049413
Alignment:
Q  71 ggggtgtatatagaaacatttggatttttggggttacatatagcaaaattctctg-aaaggcctaaactttgacatgataaaggaatgggctgaaatctg 169  Q
    |||||||||||||||| ||||||||||  ||||| | |||||| ||||||||||  ||||||| ||||||||||||||||||||||| | |||| |||||    
T  5049181 ggggtgtatatagaaatatttggatttcgggggt-atatatagaaaaattctcttcaaaggcccaaactttgacatgataaaggaattgactgacatctg 5049279  T
Q  170 ttaatgtttttgac----------agatttac--tatatatatcccatgtggtacaaatatttctatatacactctcctataannnnnnnnggttgttct 257  Q
    ||||| |||||| |          |||||| |  ||||||||| ||||||   |||||  ||||||||||||| |||||||||        |||||||||    
T  5049280 ttaatatttttggcccttttagtgagatttgctatatatatattccatgtaacacaaaattttctatatacaccctcctataaaaaaaattggttgttct 5049379  T
Q  258 taataatatgctcaaaaatttattatcgaagaaa 291  Q
    | ||||||||||||||||||||||||||||||||    
T  5049380 tgataatatgctcaaaaatttattatcgaagaaa 5049413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 71 - 291
Target Start/End: Original strand, 48999134 - 48999361
Alignment:
Q  71 ggggtgtatatagaaacatttggatttttggggttacatatagcaaaattctctg-aaaggcctaaactttgacatgataaaggaatgggctgaaatctg 169  Q
    |||||||||||||||| ||||||||||| |||| || |||||| ||| ||||||  |||| || |||||||||||||||||||||||||||||| |||||    
T  48999134 ggggtgtatatagaaatatttggattttggggggtatatatagaaaagttctcttcaaagacccaaactttgacatgataaaggaatgggctgacatctg 48999233  T
Q  170 ttaatgtttttgac----------agatttactatatatatcccatgtggtacaaatatttctatatacactctcctataannnnnnnnggttgttctta 259  Q
    ||| | |||||| |          |||||| |||||||||||||||||   ||| |  ||||||||||||| |||||||||        ||||||||||     
T  48999234 ttagtatttttggcccttttagtgagatttgctatatatatcccatgt--aacacaattttctatatacaccctcctataa-aaaatttggttgttcttg 48999330  T
Q  260 ataatatgctcaaaaatttattatcgaagaaa 291  Q
    |||||||||| |||||||||||||||||||||    
T  48999331 ataatatgct-aaaaatttattatcgaagaaa 48999361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 138 - 291
Target Start/End: Original strand, 25094960 - 25095123
Alignment:
Q  138 tttgacatgataaaggaatgggctgaaatctgttaatgttttt----------gacagatttactatatatatcccatgtggtacaaatatttctatata 227  Q
    |||||||||||| || |||||||||||||||||||||||||||          || |||||| ||||||||||||||||  | |||||||||| ||||||    
T  25094960 tttgacatgatatagtaatgggctgaaatctgttaatgtttttggcctttttagagagatttgctatatatatcccatgcagcacaaatatttatatata 25095059  T
Q  228 cactctcctataannnnnnnnggttgttcttaataatatgctcaaaaatttattatcgaagaaa 291  Q
    ||| |||||||||        ||||| |||||||||||||||| ||||||||| ||||||||||    
T  25095060 caccctcctataaaaaaaattggttgatcttaataatatgctcgaaaatttatcatcgaagaaa 25095123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 135 - 291
Target Start/End: Complemental strand, 17967636 - 17967470
Alignment:
Q  135 aactttgacatgataaaggaatgggctgaaatctgttaatgtttttgac----------agatttactatatatatcccatgtggtacaaatatttctat 224  Q
    ||||||||||||||||||||||||||||| |||||||| | |||||| |          |||||| ||||||||||| ||| |   ||||| ||||||||    
T  17967636 aactttgacatgataaaggaatgggctgacatctgttagtatttttggcccttttagtgagatttgctatatatatctcatataacacaaaaatttctat 17967537  T
Q  225 atacactctcctataannnnnnnnggttgttcttaataatatgctcaaaaatttattatcgaagaaa 291  Q
    |||||| |||||||||        |||||||||| |||||||||| |||||||||||||||||||||    
T  17967536 atacaccctcctataaaaaaaattggttgttcttgataatatgctaaaaaatttattatcgaagaaa 17967470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 186 - 300
Target Start/End: Original strand, 9023068 - 9023181
Alignment:
Q  186 atttactatatatatcccatgtggtacaaatatttctatatacactctcctataannnnnnnnggttgttcttaataatatgctcaaaaatttattatcg 285  Q
    |||| ||||||||| ||||||| | ||||| ||||| |||||||| | |||||||        |||||||||||||||| ||| ||||||||||||||||    
T  9023068 atttgctatatataccccatgtagcacaaaaatttcaatatacaccc-cctataattttttttggttgttcttaataatgtgcgcaaaaatttattatcg 9023166  T
Q  286 aagaaagtaatgata 300  Q
    |||||| | ||||||    
T  9023167 aagaaattgatgata 9023181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 138 - 240
Target Start/End: Complemental strand, 23664411 - 23664299
Alignment:
Q  138 tttgacatgataaaggaatgggctgaaatctgttaatgttttt----------gacagatttactatatatatcccatgtggtacaaatatttctatata 227  Q
    |||||||||||| || |||||||||||||||||||||||||||          || ||||||  |||||||||||||||  | |||||||||||||||||    
T  23664411 tttgacatgatatagtaatgggctgaaatctgttaatgtttttggcatttttagagagatttgttatatatatcccatgcagcacaaatatttctatata 23664312  T
Q  228 cactctcctataa 240  Q
    |||  ||||||||    
T  23664311 caccttcctataa 23664299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 72 - 181
Target Start/End: Original strand, 44310186 - 44310295
Alignment:
Q  72 gggtgtatatagaaacatttggatttttggggttacatatagcaaaattctctgaaaggcctaaactttgacatgataaaggaatgggctgaaatctgtt 171  Q
    |||| |||||||||| |||||  |||| ||||  | ||||||||||||||||||||| | |  ||| ||||||| || || || || |||||||||||||    
T  44310186 gggtatatatagaaatatttgatttttggggggaatatatagcaaaattctctgaaaaggccgaacattgacataatgaaagactgagctgaaatctgtt 44310285  T
Q  172 aatgtttttg 181  Q
    ||||||||||    
T  44310286 aatgtttttg 44310295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 251 - 300
Target Start/End: Original strand, 44310372 - 44310421
Alignment:
Q  251 ttgttcttaataatatgctcaaaaatttattatcgaagaaagtaatgata 300  Q
    |||||||||||||| ||||||||||||||||||| |||||| || |||||    
T  44310372 ttgttcttaataatgtgctcaaaaatttattatctaagaaattagtgata 44310421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 128
Target Start/End: Complemental strand, 23664493 - 23664437
Alignment:
Q  72 gggtgtatatagaaacatttggatttttggggttacatatagcaaaattctctgaaa 128  Q
    ||||||||||||||| ||||||||||| |||| ||  |||| |||||||||||||||    
T  23664493 gggtgtatatagaaatatttggattttgggggatatgtataacaaaattctctgaaa 23664437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 55
Target Start/End: Original strand, 22070179 - 22070213
Alignment:
Q  21 acggcctagggcccatgccagtagggggcccaaaa 55  Q
    ||||||||||||||||||| |||||||||||||||    
T  22070179 acggcctagggcccatgccggtagggggcccaaaa 22070213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 54
Target Start/End: Original strand, 5049130 - 5049163
Alignment:
Q  21 acggcctagggcccatgccagtagggggcccaaa 54  Q
    ||||||||||||||||||| ||||||||||||||    
T  5049130 acggcctagggcccatgccggtagggggcccaaa 5049163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 128
Target Start/End: Original strand, 9022942 - 9022998
Alignment:
Q  71 ggggtgtatatagaaacatttggatttttggggttacatatagcaaaattctctgaaa 128  Q
    |||||||||||||||| |||||| ||||||| | || ||||||| |||||||||||||    
T  9022942 ggggtgtatatagaaatatttgg-tttttggaggtatatatagcgaaattctctgaaa 9022998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 128
Target Start/End: Original strand, 25094886 - 25094934
Alignment:
Q  80 atagaaacatttggatttttggggttacatatagcaaaattctctgaaa 128  Q
    ||||||| ||||||||||| |||| ||  ||||||||||||||||||||    
T  25094886 atagaaatatttggattttgggggatatgtatagcaaaattctctgaaa 25094934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 68; Significance: 2e-30; HSPs: 5)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 74 - 291
Target Start/End: Complemental strand, 88006 - 87778
Alignment:
Q  74 gtgtatatagaaacatttggatttttggggttacatatagcaaaattctctgaaa-ggcctaaactttgacatgataaaggaatgggctgaaatctgtta 172  Q
    ||||||||| ||| ||||||||||| |||| || |||||||||||||| |||||| |||| ||||||||| |||||| || |||||||||||||||||||    
T  88006 gtgtatataaaaatatttggattttggggggtatatatagcaaaattcactgaaaaggcccaaactttgatatgatatagaaatgggctgaaatctgtta 87907  T
Q  173 atgttttt-----------gacagatttactatatatatcccatgtggtacaaatatttctatatacactctcctataannnnnnnnggttgttcttaat 261  Q
    ||||||||           |   ||||| ||||||||||| ||||  | ||||| |||||||||||||| |||||||||        |||||||||||||    
T  87906 atgttttttttaccttttagtgcgatttgctatatatatcacatgcagcacaaa-atttctatatacaccctcctataaaaaaaattggttgttcttaat 87808  T
Q  262 aatatgctcaaaaatttattatcgaagaaa 291  Q
    ||||||| | ||||||||||||||||||||    
T  87807 aatatgcccgaaaatttattatcgaagaaa 87778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 71 - 291
Target Start/End: Complemental strand, 88485 - 88253
Alignment:
Q  71 ggggtgtatatagaaacatttggatttttggggttacatatagcaaaattctctgaaa-ggcctaaactttgacatgataaaggaatgggctgaaatctg 169  Q
    |||||||||||| ||| ||||||||||| |||| || |||||||||||||| |||||| |||| ||||||||| |||||| || ||||||||||||||||    
T  88485 ggggtgtatataaaaatatttggattttggggggtatatatagcaaaattcactgaaaaggcccaaactttgatatgatatagaaatgggctgaaatctg 88386  T
Q  170 ttaatgt--ttttgac---------agatttactatatatatcccatgtggtacaaatatttctatatacactctcctat-aannnnnnnnggttgttct 257  Q
    |||||||  |||||||          ||||| ||||||||||| ||||  | ||||| |||||||||||||| ||||||| ||        | |||||||    
T  88385 ttaatgtttttttgaccttttagtgcgatttgctatatatatcacatgcagcacaaa-atttctatatacaccctcctataaaaaaaaattgattgttct 88287  T
Q  258 taataatatgctcaaaaatttattatcgaagaaa 291  Q
    ||||||||||||| ||||||||||||||||||||    
T  88286 taataatatgctcgaaaatttattatcgaagaaa 88253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #3
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 71 - 291
Target Start/End: Complemental strand, 88961 - 88729
Alignment:
Q  71 ggggtgtatatagaaacatttggatttttggggttacatatagcaaaattctctgaaa-ggcctaaactttgacatgataaaggaatgggctgaaatctg 169  Q
    |||||||||||| ||| ||||||||||| |||| || |||||||||||||| |||||| |||| ||||||||| |||||| || ||||||||||||||||    
T  88961 ggggtgtatataaaaatatttggattttggggggtatatatagcaaaattcactgaaaaggcccaaactttgatatgatatagaaatgggctgaaatctg 88862  T
Q  170 ttaatgt--ttttgac---------agatttactatatatatcccatgtggtacaaatatttctatatacactctcctat-aannnnnnnnggttgttct 257  Q
    |||||||  |||||||          ||||| ||||||||||| ||||  | ||||| |||||||||||||| ||||||| ||        | |||||||    
T  88861 ttaatgtttttttgaccttttagtgcgatttgctatatatatcacatgcagcacaaa-atttctatatacaccctcctataaaaaaaaattgattgttct 88763  T
Q  258 taataatatgctcaaaaatttattatcgaagaaa 291  Q
    ||||||||||||| ||||||||||||||||||||    
T  88762 taataatatgctcgaaaatttattatcgaagaaa 88729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #4
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 74 - 291
Target Start/End: Complemental strand, 89433 - 89205
Alignment:
Q  74 gtgtatatagaaacatttggatttttggggttacatatagcaaaattctctgaaa-ggcctaaactttgacatgataaaggaatgggctgaaatctgtta 172  Q
    ||||||||| ||| ||||||||||| || | || |||||||||||||| |||||| |||| ||||||||| |||||| || |||||||||||||||||||    
T  89433 gtgtatataaaaatatttggattttgggaggtatatatagcaaaattcactgaaaaggcccaaactttgatatgatatagaaatgggctgaaatctgtta 89334  T
Q  173 atgt--ttttgac---------agatttactatatatatcccatgtggtacaaatatttctatatacactctcctataannnnnnnnggttgttcttaat 261  Q
    ||||  |||||||          ||||| ||||||||||| ||||  | ||||| |||||||||||||| |||||||||        | |||||||||||    
T  89333 atgtttttttgaccttttagtgcgatttgctatatatatcacatgcagcacaaa-atttctatatacaccctcctataaaaaaaattgattgttcttaat 89235  T
Q  262 aatatgctcaaaaatttattatcgaagaaa 291  Q
    ||||||||| ||||||||||||||||||||    
T  89234 aatatgctcgaaaatttattatcgaagaaa 89205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 71 - 180
Target Start/End: Complemental strand, 87536 - 87426
Alignment:
Q  71 ggggtgtatatagaaacatttggatttttggggttacatatagcaaaattctctgaaa-ggcctaaactttgacatgataaaggaatgggctgaaatctg 169  Q
    |||||||||||| ||| ||||||||||| |||| || ||||||||||||||  ||||| |||| ||||||||| |||||| || ||| ||||||||||||    
T  87536 ggggtgtatataaaaatatttggattttgggggatatatatagcaaaattcattgaaaaggcccaaactttgatatgatatagaaattggctgaaatctg 87437  T
Q  170 ttaatgttttt 180  Q
    ||||| |||||    
T  87436 ttaatattttt 87426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0093 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: scaffold0093
Description:

Target: scaffold0093; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 71 - 172
Target Start/End: Original strand, 50655 - 50757
Alignment:
Q  71 ggggtgtatatagaaacatttggatttttggggttacatatagcaaaattctc-tgaaaggcctaaactttgacatgataaaggaatgggctgaaatctg 169  Q
    |||||||||||||||| ||||||||||  |||| || |||||  ||||||||| | ||||||| |||||||||||||||||||||||||||||| |||||    
T  50655 ggggtgtatatagaaatatttggatttcggggggtatatataaaaaaattctcatcaaaggcccaaactttgacatgataaaggaatgggctgacatctg 50754  T
Q  170 tta 172  Q
    |||    
T  50755 tta 50757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0093; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 291
Target Start/End: Original strand, 50849 - 50886
Alignment:
Q  254 ttcttaataatatgctcaaaaatttattatcgaagaaa 291  Q
    ||||| |||||||||||||||||||||||| |||||||    
T  50849 ttcttgataatatgctcaaaaatttattattgaagaaa 50886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0308 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0308
Description:

Target: scaffold0308; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 71 - 174
Target Start/End: Complemental strand, 12465 - 12364
Alignment:
Q  71 ggggtgtatatagaaacatttggatttttggggttacatatagcaaaattctctgaaaggcctaaactttgacatgataaaggaatgggctgaaatctgt 170  Q
    |||||||||||||||| |||||||||  ||||  || |||||| ||||||||||  || ||| ||| || ||||||||||||||||||| ||| ||||||    
T  12465 ggggtgtatatagaaatatttggattcgtggg--tatatatagaaaaattctcttcaaagcccaaaattcgacatgataaaggaatgggttgacatctgt 12368  T
Q  171 taat 174  Q
    ||||    
T  12367 taat 12364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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