View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5315_high_7 (Length: 305)
Name: NF5315_high_7
Description: NF5315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5315_high_7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 10 - 288
Target Start/End: Complemental strand, 33454211 - 33453932
Alignment:
| Q |
10 |
ataattctcaatt-catgttaatttaaataattataatactcgatctaccttattaattaggttccattgaacttatcaattggacnnnnnnnnttctgt |
108 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |
|
|
| T |
33454211 |
ataattctcaatttcatgttaatttaaataattataatactcgatctaccttattaattaggttccattgaacttataaattggacaaaaaaaattctgt |
33454112 |
T |
|
| Q |
109 |
ttgtgattgctgattaattgaacaaaacaacaacaggaacatcatgacaacctctgcagatgaaggacaatttttgagcatgctccttaaacttatcaat |
208 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33454111 |
ttgtgtttgctgattaattgaacaaaacaacaacaggaacatcatgacaacctctgcagatgaaggacaatttttgagcatgctccttaaacttatcaat |
33454012 |
T |
|
| Q |
209 |
gctaagaacaccatggaaattggtgtctacactggctactccctccttgccactgccctagccattcctgaagatggaaa |
288 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33454011 |
gctaagaacaccatggaaattggtgtctacactggctactccctccttgccactgccctagccattcctgaagatggaaa |
33453932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 162 - 249
Target Start/End: Original strand, 39054725 - 39054812
Alignment:
| Q |
162 |
ctgcagatgaaggacaatttttgagcatgctccttaaacttatcaatgctaagaacaccatggaaattggtgtctacactggctactc |
249 |
Q |
| |
|
|||| |||||||||||| || | || ||| | |||| || |||||||| |||||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
39054725 |
ctgctgatgaaggacaacttataaggatgttgattaagctcatcaatgcaaagaacacaatggaaattggtgtctacactggttactc |
39054812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 249
Target Start/End: Original strand, 39049271 - 39049317
Alignment:
| Q |
203 |
atcaatgctaagaacaccatggaaattggtgtctacactggctactc |
249 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||||||||||| |
|
|
| T |
39049271 |
atcaatgcaaagaacacgttggaaattggtgtctacactggctactc |
39049317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 267
Target Start/End: Original strand, 39236699 - 39236799
Alignment:
| Q |
167 |
gatgaaggacaatttttgagcatgctccttaaacttatcaatgctaagaacaccatggaaattggtgtctacactggctactccctccttgccactgccc |
266 |
Q |
| |
|
|||||||||||| || | |||||| | |||| ||||||||||| |||||||| | ||||||||||| |||||||| ||||| || || ||||||||| |
|
|
| T |
39236699 |
gatgaaggacaacttataagcatgttggttaagcttatcaatgcaaagaacacgttagaaattggtgtgtacactggttactctctgctctccactgccc |
39236798 |
T |
|
| Q |
267 |
t |
267 |
Q |
| |
|
| |
|
|
| T |
39236799 |
t |
39236799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 249
Target Start/End: Complemental strand, 39292048 - 39292002
Alignment:
| Q |
203 |
atcaatgctaagaacaccatggaaattggtgtctacactggctactc |
249 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||| || ||||| |
|
|
| T |
39292048 |
atcaatgcaaagaacacaatggaaattggtgtctacacaggttactc |
39292002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University