View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5315_low_1 (Length: 545)
Name: NF5315_low_1
Description: NF5315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5315_low_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 441; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 16 - 530
Target Start/End: Original strand, 46644191 - 46644707
Alignment:
| Q |
16 |
caccatctgccaagaaaaataggaaaacaaaccagataactaaacactcaaatgatggcttaagaagaaatgttataaaggaaatttagattagataaca |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
46644191 |
caccatctgccaagaaaaataggaaaacaaaccagataactaaacactcaaatgatggcttaagaagaaatgttataaaggaaatgtagattagataaca |
46644290 |
T |
|
| Q |
116 |
tcatcaagaacatacttcaagcttgagttgtaagttgtaaccaagcataaaagtaataatatacagtattactcactacttattcatacttaatgaagca |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46644291 |
tcatcaagaacatacttcaagcttgagttgtaa-------ccaagcataaaagtaataataaacagtattactcactacttattcatacttaatgaagca |
46644383 |
T |
|
| Q |
216 |
-ctcagatttcaaaactatgagtatccaactatgccaaggaactgataccatgttttctttctaactttacaaccctttgcctattaattatctaacaaa |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46644384 |
actcagatttcaaaactatgagtatccaactatgccaaggaactgataccatgttttctttctaactttacaaccctttgcctattaattatctaacaaa |
46644483 |
T |
|
| Q |
315 |
atattagatctcaaatgttttcacattaaaaactatcgatgaactcaggatatcagaatacaaaaattggcaatatgatctgaaaaatgaaaacccttac |
414 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46644484 |
atattagatctcaaatgttttcacattaacaactatcgatgaactcaggatatcagaatacaaaaattggcaatatgatctgaaaaatgaaaacccttac |
46644583 |
T |
|
| Q |
415 |
ttcaacatggttac--------ctcacataaaaactattatgaagcacggacactccacatatcaggtgtgtcccaggtacgcgtcggtgtgcgacattg |
506 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46644584 |
ttcaacatggttacctaaacaactcacataaaaactattatgaagcacggacactccacatatcaggtgtgtcccaggtacgcgtcggtgtgcgacattg |
46644683 |
T |
|
| Q |
507 |
acacgacaacaacatagatgatta |
530 |
Q |
| |
|
|| | ||||||||||||||||||| |
|
|
| T |
46644684 |
acgcaacaacaacatagatgatta |
46644707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 16 - 132
Target Start/End: Complemental strand, 46636146 - 46636029
Alignment:
| Q |
16 |
caccatctgccaagaaaaataggaaaacaaa-ccagataactaaacactcaaatgatggcttaagaagaaatgttataaaggaaatttagattagataac |
114 |
Q |
| |
|
||||||||||||||||| ||||||||||||| |||||||| |||| ||| |||| ||||||||||||||||||||||||||||| |||||||||| || |
|
|
| T |
46636146 |
caccatctgccaagaaatataggaaaacaaaaccagataattaaagactaaaatcgcggcttaagaagaaatgttataaaggaaatgtagattagattac |
46636047 |
T |
|
| Q |
115 |
atcatcaagaacatactt |
132 |
Q |
| |
|
|||||||||| ||||||| |
|
|
| T |
46636046 |
atcatcaagagcatactt |
46636029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 16 - 132
Target Start/End: Complemental strand, 46617448 - 46617332
Alignment:
| Q |
16 |
caccatctgccaagaaaaataggaaaacaaa-ccagataactaaacactcaaatgatggcttaagaagaaatgttataaaggaaatttagattagataac |
114 |
Q |
| |
|
|||||||||| |||||| |||| |||||||| ||||||||||||| | |||||| ||| ||||||||||||| ||||||||||||| ||||||||||||| |
|
|
| T |
46617448 |
caccatctgcaaagaaatatagtaaaacaaaaccagataactaaagagtcaaatcatgccttaagaagaaat-ttataaaggaaatgtagattagataac |
46617350 |
T |
|
| Q |
115 |
atcatcaagaacatactt |
132 |
Q |
| |
|
|||||||||| ||||||| |
|
|
| T |
46617349 |
atcatcaagagcatactt |
46617332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 375 - 430
Target Start/End: Complemental strand, 46628760 - 46628705
Alignment:
| Q |
375 |
caaaaattggcaatatgatctgaaaaatgaaaacccttacttcaacatggttacct |
430 |
Q |
| |
|
||||||||||||||| ||||||||| || |||||||| |||||||||||||||||| |
|
|
| T |
46628760 |
caaaaattggcaatacgatctgaaacatcaaaaccctcacttcaacatggttacct |
46628705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 377 - 430
Target Start/End: Complemental strand, 46616574 - 46616521
Alignment:
| Q |
377 |
aaaattggcaatatgatctgaaaaatgaaaacccttacttcaacatggttacct |
430 |
Q |
| |
|
||||||||||||| ||||||||| || |||||||| ||||||||| |||||||| |
|
|
| T |
46616574 |
aaaattggcaatacgatctgaaacatcaaaaccctcacttcaacacggttacct |
46616521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 16 - 46
Target Start/End: Complemental strand, 46628820 - 46628790
Alignment:
| Q |
16 |
caccatctgccaagaaaaataggaaaacaaa |
46 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
46628820 |
caccatctgccaagaaaaataggaaaacaaa |
46628790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 219 - 247
Target Start/End: Complemental strand, 46617220 - 46617192
Alignment:
| Q |
219 |
agatttcaaaactatgagtatccaactat |
247 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
46617220 |
agatttcaaaactatgagtatccaactat |
46617192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 79; Significance: 1e-36; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 23 - 144
Target Start/End: Original strand, 18376269 - 18376390
Alignment:
| Q |
23 |
tgccaagaaaaataggaaaacaaa-ccagataactaaacactcaaatgatggcttaagaagaaatgttataaaggaaatttagattagataacatcatca |
121 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| ||||||||||||| ||||||||||| ||||| ||||||||||||| ||||||||||||||||||| |
|
|
| T |
18376269 |
tgccaagaaaaataggaaaacaaaaccagataattaaacactcaaatcatggcttaagacgaaat-ttataaaggaaatgtagattagataacatcatct |
18376367 |
T |
|
| Q |
122 |
agaacatacttcaagcttgagtt |
144 |
Q |
| |
|
||| |||||||||||| |||||| |
|
|
| T |
18376368 |
agagcatacttcaagcatgagtt |
18376390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 445 - 481
Target Start/End: Original strand, 34894969 - 34895005
Alignment:
| Q |
445 |
tatgaagcacggacactccacatatcaggtgtgtccc |
481 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
34894969 |
tatgaagcacggacactcctcatattaggtgtgtccc |
34895005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University