View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5315_low_12 (Length: 252)
Name: NF5315_low_12
Description: NF5315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5315_low_12 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 6 - 252
Target Start/End: Original strand, 2551675 - 2551921
Alignment:
| Q |
6 |
agagagatgaagctttatgtagactgacctggagagccaaaactctttaaagctttcaatagcattatctgtctagccataattcagactcggttactcg |
105 |
Q |
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| T |
2551675 |
agagagatgaagctttatgtagactgacctggagagccaaaactctttaaagctttcaatagcattatctgtctagccataattcagactcggttactcg |
2551774 |
T |
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| Q |
106 |
gttacttagctgttggaattggaagtaaccgagtgaatgcccaacagacatgggattgtgcaccttccaattccaccaaagaccagctaagaagaaggaa |
205 |
Q |
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| T |
2551775 |
gttacttagctgttggaattggaagtaaccgagtgaatgcccaacagacatgggattgtgcaccttccaattccaccaaagaccagctaagaagaaggaa |
2551874 |
T |
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| Q |
206 |
acattaagaccaacaccattaaacttgatcaaagccacaacattctc |
252 |
Q |
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| T |
2551875 |
acattaagaccaacaccattaaacttgatcaaagccacaacattctc |
2551921 |
T |
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Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 172 - 235
Target Start/End: Original strand, 2803398 - 2803461
Alignment:
| Q |
172 |
ccaattccaccaaagaccagctaagaagaaggaaacattaagaccaacaccattaaacttgatc |
235 |
Q |
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| T |
2803398 |
ccaattccaccaaagaccaactaagaagagggaaacatttggaccaacaccgttagacttgatc |
2803461 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 10 - 61
Target Start/End: Complemental strand, 30653584 - 30653533
Alignment:
| Q |
10 |
agatgaagctttatgtagactgacctggagagccaaaactctttaaagcttt |
61 |
Q |
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| T |
30653584 |
agataaagctttacgtagactgacctggagagacaaaactctttaaagcttt |
30653533 |
T |
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Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 15 - 92
Target Start/End: Complemental strand, 10283917 - 10283839
Alignment:
| Q |
15 |
aagctttatgtagactgacctggagagccaaaactcttt-aaagctttcaatagcattatctgtctagccataattcag |
92 |
Q |
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|||||| ||| |||||||||| |||||| ||| |||| | ||||||||||||||||||||||| || |||||||||||| |
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| T |
10283917 |
aagcttcatgaagactgaccttgagagctaaagctctgtcaaagctttcaatagcattatctggctcgccataattcag |
10283839 |
T |
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