View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5315_low_14 (Length: 240)
Name: NF5315_low_14
Description: NF5315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5315_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 165; Significance: 2e-88; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 18 - 227
Target Start/End: Original strand, 5481821 - 5482022
Alignment:
| Q |
18 |
agttgtttcgaactgtgaataagatgtcttctttgttagagttgcacttgtcctcttgcaatcttgttgctctcccttcatcttcaccgtttttaaatat |
117 |
Q |
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||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
5481821 |
agttgtttcgatctgtgaataagatgtcttctatgttagagttgcacttgtcctctt--------gttgctctcccttcatcttcaccgtttttaaatat |
5481912 |
T |
|
| Q |
118 |
gacatcactttctgtccttgatctctcaggaaatccttttcattcctcaatgccttcttggatattcaacatgagcagtctcatagaactagatcttcgt |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
5481913 |
gacatcactttctgtccttgatctctcaggaaatccttttcattcctcaataccttcttggatattcaacatgagcagtctcatagaactagatctttgt |
5482012 |
T |
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| Q |
218 |
aattcatctc |
227 |
Q |
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|||||||||| |
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| T |
5482013 |
aattcatctc |
5482022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 31 - 194
Target Start/End: Original strand, 5489883 - 5490046
Alignment:
| Q |
31 |
tgtgaataagatgtcttctttgttagagttgcacttgtcctcttgcaatcttgttgctctcccttcatcttcaccgtttttaaatatgacatcactttct |
130 |
Q |
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||||||||||||||| | ||||||||| ||||| ||| | ||||||||||||| ||||||||| |||| ||||| ||||||||| |||||||||||| |
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| T |
5489883 |
tgtgaataagatgtcatatttgttagaattgcatttggcttcttgcaatcttggcgctctccctccatcgtcaccatttttaaattctacatcactttct |
5489982 |
T |
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| Q |
131 |
gtccttgatctctcaggaaatccttttcattcctcaatgccttcttggatattcaacatgagca |
194 |
Q |
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|| ||||||||||| ||||||| |||| |||||||||| ||||||||||| ||||||||||||| |
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| T |
5489983 |
gtgcttgatctctctggaaatcattttaattcctcaataccttcttggatgttcaacatgagca |
5490046 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 19 - 192
Target Start/End: Original strand, 5476749 - 5476922
Alignment:
| Q |
19 |
gttgtttcgaactgtgaataagatgtcttctttgttagagttgcacttgtcctcttgcaatcttgttgctctcccttcatcttcaccgtttttaaatatg |
118 |
Q |
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|||||||||| ||||||| |||||||||||| ||||||||||||| ||| | |||||| || | |||||||| || |||| || ||||||||||| |
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| T |
5476749 |
gttgtttcgagctgtgaaaaagatgtcttctctgttagagttgcatttggcttcttgcggaatttcttctctccctccaacttcgccatttttaaatatt |
5476848 |
T |
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| Q |
119 |
acatcactttctgtccttgatctctcaggaaatccttttcattcctcaatgccttcttggatattcaacatgag |
192 |
Q |
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||| |||||||||| ||||||||||| ||||||||||| || ||||||||||||||||| | ||||||||||| |
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| T |
5476849 |
acaccactttctgtgcttgatctctctggaaatcctttaaatacctcaatgccttcttggctgttcaacatgag |
5476922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 18 - 144
Target Start/End: Original strand, 5467113 - 5467239
Alignment:
| Q |
18 |
agttgtttcgaactgtgaataagatgtcttctttgttagagttgcacttgtcctcttgcaatcttgttgctctcccttcatcttcaccgtttttaaatat |
117 |
Q |
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||||||||||| |||| ||||||||| | ||| ||||||||||||| ||||||| ||||||||||| ||| |||||| |||||||||| ||||||||||| |
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| T |
5467113 |
agttgtttcgagctgttaataagatgccatctctgttagagttgcatttgtccttttgcaatcttgctgcactccctccatcttcaccctttttaaatat |
5467212 |
T |
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| Q |
118 |
gacatcactttctgtccttgatctctc |
144 |
Q |
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||||||||| ||| ||||| ||||| |
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| T |
5467213 |
ttcatcactttatgtgcttgacctctc |
5467239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 18 - 193
Target Start/End: Original strand, 5500687 - 5500862
Alignment:
| Q |
18 |
agttgtttcgaactgtgaataagatgtcttctttgttagagttgcacttgtcctcttgcaatcttgttgctctcccttcatcttcaccgtttttaaatat |
117 |
Q |
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||||||||||| |||||||||||||||| ||| | ||||||||||| ||||||| ||||| ||||| | | |||||| || ||||||| ||| ||||||| |
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| T |
5500687 |
agttgtttcgagctgtgaataagatgtcatctctattagagttgcatttgtccttttgcagtcttgcttcactccctccagcttcaccatttctaaatat |
5500786 |
T |
|
| Q |
118 |
gacatcactttctgtccttgatctctcaggaaatccttttcattcctcaatgccttcttggatattcaacatgagc |
193 |
Q |
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||||| ||||| ||| ||||| | ||||||| |||| ||||| | || ||||||||| | |||||||||||| |
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| T |
5500787 |
tacatctctttccaggctttatctcactggaaatctttttaattccactataccttcttggctgttcaacatgagc |
5500862 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 73 - 178
Target Start/End: Original strand, 5495707 - 5495812
Alignment:
| Q |
73 |
ttgcaatcttgttgctctcccttcatcttcaccgtttttaaatatgacatcactttctgtccttgatctctcaggaaatccttttcattcctcaatgcct |
172 |
Q |
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||||||||||| | |||||| |||||||||| ||||||||||| |||||||||||||| ||||||||||| |||||||||||| |||| || || ||| |
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| T |
5495707 |
ttgcaatcttgcttttctcccaccatcttcaccatttttaaatattacatcactttctgtgcttgatctctctggaaatccttttaattcatctatacct |
5495806 |
T |
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| Q |
173 |
tcttgg |
178 |
Q |
| |
|
|||||| |
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| T |
5495807 |
tcttgg |
5495812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 18 - 116
Target Start/End: Original strand, 5484685 - 5484783
Alignment:
| Q |
18 |
agttgtttcgaactgtgaataagatgtcttctttgttagagttgcacttgtcctcttgcaatcttgttgctctcccttcatcttcaccgtttttaaata |
116 |
Q |
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|
||||||||||| |||||||||||||||| ||| | ||||||||||| ||||||||||||||||||| | |||| || | |||||||| |||||||||| |
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| T |
5484685 |
agttgtttcgagctgtgaataagatgtcatctctattagagttgcatttgtcctcttgcaatcttgcttctcttccaccgtcttcaccatttttaaata |
5484783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 107 - 192
Target Start/End: Original strand, 5485000 - 5485084
Alignment:
| Q |
107 |
tttttaaatatgacatcactttctgtccttgatctctcaggaaatccttttcattcctcaatgccttcttggatattcaacatgag |
192 |
Q |
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||||||||||| |||||||||| ||| |||||||||| |||||||||||| |||||||| | ||||||||||| ||||||||||| |
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| T |
5485000 |
tttttaaatattacatcactttatgtg-ttgatctctctggaaatccttttaattcctcattaccttcttggatgttcaacatgag |
5485084 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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