View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5315_low_3 (Length: 367)
Name: NF5315_low_3
Description: NF5315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5315_low_3 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 20 - 367
Target Start/End: Complemental strand, 31994456 - 31994109
Alignment:
| Q |
20 |
aaaaccgcttttcctgattaacgccgccactttgttgatgatcatcataagcttctggcattatatactccttataatcctcagcgctctctaagcctct |
119 |
Q |
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| T |
31994456 |
aaaaccgcttttcctgattaacgccgccactttgttgatgatcatcataagcttctggcattatatactccttataatcctcagcgctctctaagcctct |
31994357 |
T |
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| Q |
120 |
cttcttcgaaactacatcgtatatatctttcttgtgcttgagatcacagtattcagcttttgaaaccctaactccttcaaatagatattgttcatctaga |
219 |
Q |
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| T |
31994356 |
cttcttcgaaactacatcgtatatatctttcttgtgcttgagatcacagtattcagcttttgaaaccctaactccttcaaatagatattgttcatctata |
31994257 |
T |
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| Q |
220 |
atatactccttaagctgttgcaatttcttttcctcccttcttttcaagtagtcataccttgaaaaatttctcaagttttgaatatcttcttcagctttag |
319 |
Q |
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| T |
31994256 |
atatactccttaaggtgttgcagtttcttttcctcccttcttttcaagtactcataccttgaaaaatttctcaaggtttgaatatcttcttcagctttag |
31994157 |
T |
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| Q |
320 |
atctcttgaattccctctcaacttgaactgctcctttgcttctcctct |
367 |
Q |
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| T |
31994156 |
atctcttgaattccctctcaacttgaactgctcctttacttcttctct |
31994109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 58 - 202
Target Start/End: Complemental strand, 15840876 - 15840738
Alignment:
| Q |
58 |
tgatcatcataagcttctggcattatatactccttataatcctcagcgctctctaagcctctcttcttcgaaactacatcgtatatatctttcttgtgct |
157 |
Q |
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| T |
15840876 |
tgatcatcataagcttctggcattctatacgcattat------ccgcaccctctaaccctattttcttcacaagtacctcgtatatctctttcttgtgca |
15840783 |
T |
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| Q |
158 |
tgagatcacagtattcagcttttgaaaccctaactccttcaaata |
202 |
Q |
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| T |
15840782 |
tgagatcacggcattcttcttttgaaagctcaactccttcaaata |
15840738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 120 - 216
Target Start/End: Complemental strand, 24008817 - 24008721
Alignment:
| Q |
120 |
cttcttcgaaactacatcgtatatatctttcttgtgcttgagatcacagtattcagcttttgaaaccctaactccttcaaatagatattgttcatct |
216 |
Q |
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| T |
24008817 |
cttcttcgcaagtacattgtatatatctttcttgtgcatgaaatcacggtattccacgtctgaacgcttcactccttcaaatagataatgctcatct |
24008721 |
T |
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