View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5315_low_6 (Length: 331)
Name: NF5315_low_6
Description: NF5315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5315_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 234; Significance: 1e-129; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 13 - 313
Target Start/End: Complemental strand, 38093125 - 38092829
Alignment:
| Q |
13 |
aatatattcaaggaaattttgcaacaagaacaaatattcctggatcccacaatttgaatgaagatcttgttctcatagacgtatcaaattgtccgaagga |
112 |
Q |
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| T |
38093125 |
aatatattcaaggaaattttgcaactagaacaaatattcgtggatcccacaatttgaatgaagatcttgttctcatagacgtatcgaattgtccgaagga |
38093026 |
T |
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| Q |
113 |
atcccattgtttccttttt-ccaatatttctcattcaagaaaacaacatatagggtttctttccttctgcaccctttgagtcaattctgcatgctttgtt |
211 |
Q |
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| T |
38093025 |
atcccattgtttccttttttccaatatttctcattcaagaaaacaacatatagggtttcttg-----tgcaccctttgagtcaattctgcatgctttgtt |
38092931 |
T |
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| Q |
212 |
gtctccattagccttgaccccaacagttcatgtacataactttctgaagagaatcatcggtttgtctcaacttctctttcgcctcagaactaatgacggt |
311 |
Q |
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| T |
38092930 |
gtctccattagccctgaccccaacagttcatgtacataactttctgaagagaatcatcggtttgtctcaacttcttttttggctcagaactcacgacggt |
38092831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 219 - 289
Target Start/End: Complemental strand, 38089937 - 38089867
Alignment:
| Q |
219 |
ttagccttgaccccaacagttcatgtacataactttctgaagagaatcatcggtttgtctcaacttctctt |
289 |
Q |
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| T |
38089937 |
ttagccttgaccccaacaattcatgtacataactttctggagagaatcatcggtttgtctcagcttctctt |
38089867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 219 - 302
Target Start/End: Complemental strand, 38096191 - 38096108
Alignment:
| Q |
219 |
ttagccttgaccccaacagttcatgtacataactttctgaagagaatcatcggtttgtctcaacttctctttcgcctcagaact |
302 |
Q |
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| T |
38096191 |
ttagccttgaccccagcaattcatgtacataactttccgaagagaatcatcggttcttcttagcttctcatccgcttcagaact |
38096108 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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