View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5315_low_8 (Length: 321)
Name: NF5315_low_8
Description: NF5315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5315_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 16 - 308
Target Start/End: Original strand, 39762655 - 39762944
Alignment:
| Q |
16 |
taagatgtcttcattatatgtcctaatccaaatttcgtggatgctttgatttgcatcgagtttggcaaaatcacggtgccaccattatttcatcaaatct |
115 |
Q |
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| T |
39762655 |
taagatgtcttcattataggtcctaatccaaacttcttggatgttttgatttgcatcgagtttggcaaaatcacggtgccaccattatttcatcaaatct |
39762754 |
T |
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| Q |
116 |
aaagttattccaaacatacacttaattgttgaagaggtgccactacagctaacgtagaaaaaagaagtcatcaaataagagttctggcaaaaccatgatg |
215 |
Q |
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| T |
39762755 |
aaagttattccaaacatacacttaattgttgaagatgagccactacagctaacgtagaaaaaagaag---tcaaagaagagaagtcatcaaataagagtt |
39762851 |
T |
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| Q |
216 |
gcggcaacaacattatagattaacaaatacttcaaaatggaaacaataaattaaaccactacattcttattttgacataataacctactagaa |
308 |
Q |
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| T |
39762852 |
ctggcaacaacattatagattaacaaatacttcaaaatggaaacaataaattaaactactacattcttattttgacataataacctactagaa |
39762944 |
T |
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