View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5315_low_9 (Length: 306)

Name: NF5315_low_9
Description: NF5315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5315_low_9
NF5315_low_9
[»] chr1 (3 HSPs)
chr1 (19-290)||(50361560-50361832)
chr1 (22-147)||(12604916-12605041)
chr1 (194-278)||(12604806-12604892)
[»] chr2 (2 HSPs)
chr2 (23-147)||(10451869-10451993)
chr2 (194-278)||(10452017-10452103)
[»] chr3 (1 HSPs)
chr3 (22-111)||(30997828-30997917)
[»] chr8 (1 HSPs)
chr8 (140-186)||(13862300-13862346)
[»] chr4 (1 HSPs)
chr4 (140-186)||(52527596-52527642)


Alignment Details
Target: chr1 (Bit Score: 245; Significance: 1e-136; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 19 - 290
Target Start/End: Original strand, 50361560 - 50361832
Alignment:
Q  19 aggattgtcatatgggtaggtgatccggctgagtcacagagagtgattcaatttgaggtaagtaaattatttagatgttctgctcctaaagaacttgaag 118  Q
    ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||    
T  50361560 aggattgtcgtatgggtaggtgattcggctgagtcacagagagtgattcaatttgaggtaagtaaattacacagatgttctgctcctaaagaacttgaag 50361659  T
Q  119 ctcttgaaaattcaatgtcacattgagaagtgtataaattaatgttatacttatgcttaataccaacaagctattgatttttcgaatgtgctttatttta 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50361660 ctcttgaaaattcaatgtcacattgagaagtgtataaattaatgttatacttatgcttaataccaacaagctattgatttttcgaatgtgctttatttta 50361759  T
Q  219 ttgatttgttttaaggaataaatgt-aggcttattgccatttgattctaattacacgtgttgaattagtttat 290  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  50361760 ttgatttgttttaaggaataaatgtaaggcttattgccatttgattctaattacacgtgttgaattagtttat 50361832  T

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Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 22 - 147
Target Start/End: Complemental strand, 12605041 - 12604916
Alignment:
Q  22 attgtcatatgggtaggtgatccggctgagtcacagagagtgattcaatttgaggtaagtaaattatttagatgttctgctcctaaagaacttgaagctc 121  Q
    |||||||||| | |||||||| |||||||||||||||||||||||  |||||||||| ||||||||  ||||||||||||||||||||||  | ||| ||    
T  12605041 attgtcatatagataggtgattcggctgagtcacagagagtgattatatttgaggtatgtaaattacgtagatgttctgctcctaaagaaaataaagttc 12604942  T
Q  122 ttgaaaattcaatgtcacattgagaa 147  Q
    || |||||||||||||| ||||||||    
T  12604941 ttcaaaattcaatgtcagattgagaa 12604916  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 278
Target Start/End: Complemental strand, 12604892 - 12604806
Alignment:
Q  194 gatttttcgaatgtgctttattttattgatttgttttaaggaataaatg-taggcttattgccatttga-ttctaattacacgtgtt 278  Q
    |||||||||| ||||||||||||| ||||||| ||| |||| |||  ||  |||||||||||||||||| || ||||||||||||||    
T  12604892 gatttttcgactgtgctttattttgttgatttatttgaaggtatagttgcaaggcttattgccatttgatttttaattacacgtgtt 12604806  T

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Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 23 - 147
Target Start/End: Original strand, 10451869 - 10451993
Alignment:
Q  23 ttgtcatatgggtaggtgatccggctgagtcacagagagtgattcaatttgaggtaagtaaattatttagatgttctgctcctaaagaacttgaagctct 122  Q
    ||||||||||| |||||||| || ||||||||||||||||||||  |||||||||| ||||||||  ||||||||||||||||||||||  | ||| |||    
T  10451869 ttgtcatatggataggtgattcgactgagtcacagagagtgattatatttgaggtatgtaaattacgtagatgttctgctcctaaagaaaataaagttct 10451968  T
Q  123 tgaaaattcaatgtcacattgagaa 147  Q
    | |||||||||||||||||||||||    
T  10451969 tcaaaattcaatgtcacattgagaa 10451993  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 194 - 278
Target Start/End: Original strand, 10452017 - 10452103
Alignment:
Q  194 gatttttcgaatgtgctttattttattgatttgttttaaggaataaatg-taggcttattgccatttga-ttctaattacacgtgtt 278  Q
    |||||||||| ||||||||||||| ||||||| ||| |||| |||  ||  |||||||||||||||||| |||||||||||||||||    
T  10452017 gatttttcgattgtgctttattttgttgatttatttgaaggtatagttgcaaggcttattgccatttgatttctaattacacgtgtt 10452103  T

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Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 22 - 111
Target Start/End: Complemental strand, 30997917 - 30997828
Alignment:
Q  22 attgtcatatgggtaggtgatccggctgagtcacagagagtgattcaatttgaggtaagtaaattatttagatgttctgctcctaaagaa 111  Q
    |||||||||||| |||||||| |||||||||||||||||||||||  |||||||||| ||||||||  |||||||||||||| |||||||    
T  30997917 attgtcatatggataggtgattcggctgagtcacagagagtgattatatttgaggtatgtaaattacgtagatgttctgctcttaaagaa 30997828  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 140 - 186
Target Start/End: Complemental strand, 13862346 - 13862300
Alignment:
Q  140 attgagaagtgtataaattaatgttatacttatgcttaataccaaca 186  Q
    |||||||| |||||||||||||  | |||||||||||||||||||||    
T  13862346 attgagaactgtataaattaatactgtacttatgcttaataccaaca 13862300  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 140 - 186
Target Start/End: Complemental strand, 52527642 - 52527596
Alignment:
Q  140 attgagaagtgtataaattaatgttatacttatgcttaataccaaca 186  Q
    |||||||| |||||||||||||  | |||||||||||||||||||||    
T  52527642 attgagaactgtataaattaatactgtacttatgcttaataccaaca 52527596  T

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