View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5316-Insertion-5 (Length: 339)
Name: NF5316-Insertion-5
Description: NF5316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5316-Insertion-5 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 8 - 339
Target Start/End: Complemental strand, 8518844 - 8518513
Alignment:
| Q |
8 |
caatccaacttcgaaaactctaatatagcattactcaactcagtataatccaaatcaaacccagtaacaccacatggaaaaacaagcataacacaatcag |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
8518844 |
caatccaacttcgaaaactctaatatagcattactcaactcagtataatccaaatcaaacccagtaacaccacttggaaaaacaagcataacacaatcag |
8518745 |
T |
|
| Q |
108 |
gatgttcaaactcaatctcaggaatcttacctttaacagccctcgttggtgtttcaaattcaggaaaaacatcaagtcccgtaagaaacttcaactcttc |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
8518744 |
gatgttcaaactcaatctcaggaatcttacctttaacagccctcgtcggtgtttcaaattcaggaaaaacatcaagtcccataagaaacttcaactcttc |
8518645 |
T |
|
| Q |
208 |
acaccctaatgaatccaaaagcttcacatcccaaccaagactagcagcagccattgaaacagcaccaatagcatgaccaacatcatgattacaataccga |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8518644 |
acaccctaatgaatccaaaagcttcacatcccaaccaagactagcagcagccattgaaatagcaccaatagcatgaccaacatcatgattacaataccga |
8518545 |
T |
|
| Q |
308 |
aaaccacgttcgccatacttccaactttcacg |
339 |
Q |
| |
|
||||||||||| |||||||||||||||||||| |
|
|
| T |
8518544 |
aaaccacgttcaccatacttccaactttcacg |
8518513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University