View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5316_high_10 (Length: 441)
Name: NF5316_high_10
Description: NF5316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5316_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 211 - 407
Target Start/End: Original strand, 27574135 - 27574330
Alignment:
| Q |
211 |
ctttcataatttgggtatatacgtaggttttatctattgttttgtttgtctctgttaacatgtttttgtggtacaacaacaacaataacaacaggaattt |
310 |
Q |
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| T |
27574135 |
ctttcataatttgggtatatacgtaggttttatctattgttt-gtttgtctctgttaacatgtttttgtggtacaacaacaacaataacaacaggaattt |
27574233 |
T |
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| Q |
311 |
acagagtacacaaactttgatgagtgtttgcaatatattgaggattacatgatcaaacatggaccgtttgatggtcttcttggattctcacaggttc |
407 |
Q |
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| T |
27574234 |
acagagtacacaaactttgatgagtgtttgcaatatattgaggattacatgatcaaacatggaccgtttgatggtcttcttggattctcacaggttc |
27574330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 23 - 178
Target Start/End: Original strand, 27573950 - 27574105
Alignment:
| Q |
23 |
gagagatcatgaaaaaacagatacataagtggccacaaaatgttctagacaaactcgatcttgtttttgtcgatgctccttttccttgtaatggcaaatc |
122 |
Q |
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| T |
27573950 |
gagagatcatgaaaaaacagatacataagtggccacaaaatgttcttgacaaactcgatcttgtttttgtcgatgctccttttccttgtaatggcaaatc |
27574049 |
T |
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| Q |
123 |
tgatgttgaaggaattttcgaccctccttattatgagtggttccagttcaacaagg |
178 |
Q |
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| T |
27574050 |
tgatgttgaaggaattttcgaccctccttattatgagtggttccagttcaacaagg |
27574105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 118 - 167
Target Start/End: Complemental strand, 14068165 - 14068116
Alignment:
| Q |
118 |
aaatctgatgttgaaggaattttcgaccctccttattatgagtggttcca |
167 |
Q |
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| T |
14068165 |
aaatcagatgttgaaggcattttcgatcctccttattatgaatggttcca |
14068116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 119; Significance: 1e-60; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 23 - 173
Target Start/End: Original strand, 13118708 - 13118858
Alignment:
| Q |
23 |
gagagatcatgaaaaaacagatacataagtggccacaaaatgttctagacaaactcgatcttgtttttgtcgatgctccttttccttgtaatggcaaatc |
122 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| || |||| |||||| |
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| T |
13118708 |
gagagatcatgaaaaaacagatacataagtggccacaaaatgttctagacaaactagatcttgtttttgtcgaagctccttttccatgcaatgacaaatc |
13118807 |
T |
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| Q |
123 |
tgatgttgaaggaattttcgaccctccttattatgagtggttccagttcaa |
173 |
Q |
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| T |
13118808 |
tgatgttgaagacattttcgaccctccttattatgagtggttcccgttcaa |
13118858 |
T |
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