View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5316_high_15 (Length: 404)
Name: NF5316_high_15
Description: NF5316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5316_high_15 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 6 - 389
Target Start/End: Original strand, 13016800 - 13017177
Alignment:
| Q |
6 |
gtaaataatactggctaaataaaaacatgtagcttggcttgagaaaaaataggaagtaaggttgaactcaataaacacgtttttagtttnnnnnnnnnnn |
105 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13016800 |
gtaaataacactggctaaataaaaacatgtagcttggcttgagaaaaaataggaagtaaggttgaactcaataaacacgtttttagttttaataataata |
13016899 |
T |
|
| Q |
106 |
nnnnnnnnnnacaatgcctcagacaccaccttaaaaaccaccccgttcctattttaggaatgaacataacaccaacacactccaccgtctcaagtgtcaa |
205 |
Q |
| |
|
|||||||||||||||||| || |||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13016900 |
ataa------acaatgcctcagacaccatctcaaaaaccaccccattcctatttcaggaatgaacataacaccaacacactccaccgtctcaagtgtcaa |
13016993 |
T |
|
| Q |
206 |
caaactattaaatatgtactaagtaactaagttgttcctactaactcatagctcatttaaatttgataagtccacctgcctatctcaaattcagctactc |
305 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13016994 |
caaactattaaatatgtactaaacaactaagttgttcctactaactcatagctcatttaaatttgataagtccacctgcctatctcaaattcagctactc |
13017093 |
T |
|
| Q |
306 |
caaacaactggcgtagctccataagaaaataattaaatcagagaagcaaggataacaacaatcaaagaatatgtcgactgaaac |
389 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13017094 |
caaacaactggtgtagctccataagaaaataattaaatcagagaagcaaggataacaacaatcaaagaatatgtcgactgaaac |
13017177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 16 - 94
Target Start/End: Complemental strand, 43649492 - 43649414
Alignment:
| Q |
16 |
ctggctaaataaaaacatgtagcttggcttgagaaaaaataggaagtaaggttgaactcaataaacacgtttttagttt |
94 |
Q |
| |
|
|||||| |||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
43649492 |
ctggctgaataaaaatatgtagcttggcttgagaaaaaataggaagcaaggttgaactcaataaacacgtttttagttt |
43649414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 17 - 94
Target Start/End: Complemental strand, 43658603 - 43658525
Alignment:
| Q |
17 |
tggctaaataaaaacatgtagcttggcttgagaaaaaa-taggaagtaaggttgaactcaataaacacgtttttagttt |
94 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43658603 |
tggctgaataaaaacatgtagcttggcttgagaaaaaaataggaagtaaggttgaactcaataaacacgtttttagttt |
43658525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University