View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5316_high_18 (Length: 374)
Name: NF5316_high_18
Description: NF5316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5316_high_18 |
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Alignment Details
Target: chr5 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 19 - 365
Target Start/End: Complemental strand, 18174123 - 18173777
Alignment:
| Q |
19 |
attccagccacttgtttaaatttctattaatcgcatgataaatcatatttcacctaactacgatttaaatagagatgtactcgagtataacggagttcat |
118 |
Q |
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| T |
18174123 |
attccagctacttgtttaaatttctattaaccacattataaatcatatttcatctaactacgatttaaatagagatgttctcgagtataacgcagttcat |
18174024 |
T |
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| Q |
119 |
aactacattacaatatgcaggtaagggtttgaacccnnnnnnnnttatttggaccgagattgatagtttcaataatttgatgcattcatccaattatgtg |
218 |
Q |
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| T |
18174023 |
aactacattacaatatgcaggtaagggtttgaatccaaaaaaaattatttggatcgagattgatagtttcaataatttgatgcattcatccaattgtgtg |
18173924 |
T |
|
| Q |
219 |
gttgttggatcgaaattagactacattaaaatcccaagtcccaacagatcaatctcaatataacaaacatcgatgaactgaatgcgtgaatgcgtcgatt |
318 |
Q |
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|||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |
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| T |
18173923 |
gttgttggatcgaaattagactacattaaaattccaaatcccaacagatcaatctcaatataacaaacatcgatgaattgaatgcgtgaatgcgtcaatt |
18173824 |
T |
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| Q |
319 |
aaaatcccaaagtaccaccattataatagatactttgctacctttgc |
365 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
18173823 |
aaaatcccaaagtaccaccattagaatagatactttgctacctttgc |
18173777 |
T |
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