View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5316_high_20 (Length: 338)
Name: NF5316_high_20
Description: NF5316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5316_high_20 |
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Alignment Details
Target: chr3 (Bit Score: 169; Significance: 1e-90; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 132 - 323
Target Start/End: Complemental strand, 6792261 - 6792069
Alignment:
| Q |
132 |
ccatagatattccaatgatcaaaattatatgggaagagaaacttatgcataataatccaaaacctgaagcgatttcatacaaggttttctgtctccaata |
231 |
Q |
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| T |
6792261 |
ccatagatattccaatgatcaaaattatatgggaagagaaacttatgtataataatccaaaacctgaagcgatttcatacaaggttttctgtctccaata |
6792162 |
T |
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| Q |
232 |
ttcctagggtggattcttcaaacgaatccaaacttgtacatgtgtttggacctga-ttttgtggcttcatgttcttcatccaacagaagaaac |
323 |
Q |
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| T |
6792161 |
ttcctagggtggattcttcaaacgaatccaaacttgtgcatgtgtttggacctgatttttgtggcttgaagttcttcatccaacagaagaaac |
6792069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 9 - 173
Target Start/End: Complemental strand, 6799527 - 6799368
Alignment:
| Q |
9 |
acatcatcataaaaatgctttcagaagtctatcacctaatttaacaaagactctctaggatnnnnnnnntggtttctaatttctacagttatttaaggta |
108 |
Q |
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| T |
6799527 |
acattatcgtaaaaatgctttcagaagtctatcatctaatttaacaaagacactctgggataaaaaa--tggtttctaatttctaaagttacatcagatt |
6799430 |
T |
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| Q |
109 |
tggacacacatatagaacacaatccatagatattccaatgatcaaaattatatgggaagagaaac |
173 |
Q |
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| T |
6799429 |
tggacagacatatagaacacaatccatagatattttaatgatcaaa---atatgggaagagaaac |
6799368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 187 - 258
Target Start/End: Complemental strand, 6797427 - 6797356
Alignment:
| Q |
187 |
tccaaaacctgaagcgatttcatacaaggttttctgtctccaatattcctagggtggattcttcaaacgaat |
258 |
Q |
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| T |
6797427 |
tccaatacctgaagcgatttcatactaggttttctgtctcaaatattcctggggtagattcttcaaacgaat |
6797356 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 114 - 193
Target Start/End: Complemental strand, 6797542 - 6797466
Alignment:
| Q |
114 |
acacatatagaacacaatccatagatattccaatgatcaaaattatatgggaagagaaacttatgcataataatccaaaa |
193 |
Q |
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| T |
6797542 |
acacatatagaacacaatccatagatattccaatgatcaaa---agatgggaagagaggcttgtgcataataatccaaaa |
6797466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 9 - 57
Target Start/End: Complemental strand, 6792319 - 6792271
Alignment:
| Q |
9 |
acatcatcataaaaatgctttcagaagtctatcacctaatttaacaaag |
57 |
Q |
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| T |
6792319 |
acatcatcataaaaatgctttcagaagtctatcacctaatttaacaaag |
6792271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 78 - 155
Target Start/End: Complemental strand, 6531448 - 6531371
Alignment:
| Q |
78 |
tggtttctaatttctacagttatttaaggtatggacacacatatagaacacaatccatagatattccaatgatcaaaa |
155 |
Q |
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| T |
6531448 |
tggtttctaatttctaaagtaattttagatatggacacacacatagaacacaatccatatatattgtaatgattaaaa |
6531371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 155
Target Start/End: Original strand, 6941082 - 6941123
Alignment:
| Q |
114 |
acacatatagaacacaatccatagatattccaatgatcaaaa |
155 |
Q |
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| T |
6941082 |
acacatatagaacacagtccatagatattctaatgattaaaa |
6941123 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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