View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5316_high_22 (Length: 324)
Name: NF5316_high_22
Description: NF5316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5316_high_22 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 9 - 306
Target Start/End: Original strand, 43331193 - 43331488
Alignment:
| Q |
9 |
caaaggtgggcaaaaatcttaccttggaaatgtttctctgctcggnnnnnnnncccttcagaatattagctttgaaatcttgttcactacctaacctggc |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
43331193 |
caaaggtgggcaaaaatcttaccttggaaatgtttctctgctcggttttttttcccttcagaatattagctttgaaatcttgttcactgcctaacctggc |
43331292 |
T |
|
| Q |
109 |
gcttctgnnnnnnnnnnnnnnnnnnnnnaattttagaattatacatggaattgtttgataatggtggcttaatccattgctcgaattgagggagtgattg |
208 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43331293 |
gcttctgttttgttttttgttttttt--aattttagaattatacatggaattgtttgataatggtggcttaatccattgctcgaattgagggagtgattg |
43331390 |
T |
|
| Q |
209 |
atatggggcatttttctgcattaaaatgatttacaggtaagatatagagcatcataatatattgatctccgtgttagtagcatttcacatggaacata |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
43331391 |
atatggggcatttttctgcattaaaatgatttataggtaagatatagagcatcataatatattgatctccatgttagtggcatttcacatggaacata |
43331488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 137 - 298
Target Start/End: Original strand, 43322316 - 43322482
Alignment:
| Q |
137 |
aattttagaattatacatggaattgtttgataatggtggctt---aatccattgctcgaattgagggagtgattgatatggggcatttttctgcattaaa |
233 |
Q |
| |
|
|||||||||||||||||| ||| ||| || ||||||||||| |||||||| ||| || || || |||||||| |||||||||||||||||||||||| |
|
|
| T |
43322316 |
aattttagaattatacattgaactgtcagaaaatggtggcttctgaatccatttctcaaactgtggcagtgattggtatggggcatttttctgcattaaa |
43322415 |
T |
|
| Q |
234 |
atgatttacaggtaag--atatagagcatcataatatattgatctccgtgttagtagcatttcacat |
298 |
Q |
| |
|
|||||||| ||||| | | | ||||||||||||||||||||| ||| |||||||||||| |||| |
|
|
| T |
43322416 |
atgatttatgtgtaagaaaaaaacagcatcataatatattgatcttcgtattagtagcatttgacat |
43322482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 176 - 298
Target Start/End: Original strand, 43316015 - 43316140
Alignment:
| Q |
176 |
cttaatccattgctcgaattgagggagtgattgatatggggcatttttctgcattaaaatgatttacaggtaag---atatagagcatcataatatattg |
272 |
Q |
| |
|
||||||||||| | |||||| || |||||||| |||||||||||||||||| ||| ||||| |||||| | | ||||||||||||||||||| |
|
|
| T |
43316015 |
cttaatccattcgttgaattgtggcagtgattggcgaggggcatttttctgcattgaaagaatttataggtaaagaaaaaaagagcatcataatatattg |
43316114 |
T |
|
| Q |
273 |
atctccgtgttagtagcatttcacat |
298 |
Q |
| |
|
||| | |||||||||||||||||||| |
|
|
| T |
43316115 |
atcactgtgttagtagcatttcacat |
43316140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University