View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5316_high_25 (Length: 277)
Name: NF5316_high_25
Description: NF5316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5316_high_25 |
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Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 11 - 258
Target Start/End: Complemental strand, 33806677 - 33806430
Alignment:
| Q |
11 |
aatgaatctgtccagtcttctttcagtgtatcttcttccacttctaccattttgccaagcgaatgttgcacctttggtggtaaggtgtatcaggttattt |
110 |
Q |
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| T |
33806677 |
aatgaatctgtccagtcttctttcagtgtatcttcttccacttctaccattttgccaagcgaatgttgcacctttggtgggaaggtgtatcaggttattt |
33806578 |
T |
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| Q |
111 |
ctattagtccacaattgaaagcccttcattgcagttctagaaggtcaataataccccttgtgctcataagctcctaagatggagttgaaatctcccataa |
210 |
Q |
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| T |
33806577 |
ctattagtccacaattgaaagtccttcattgcagttctggaaggtcaataatgccccttgtgcttataagctcctaagatggagttgaaatctcccataa |
33806478 |
T |
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| Q |
211 |
agcaccagggaatggggtggttcgtttgtaaagattgcagggactgcc |
258 |
Q |
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| T |
33806477 |
agcaccagggaatggggtagttcgtttgtaaagattgcagggactgcc |
33806430 |
T |
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Back To:
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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 217
Target Start/End: Original strand, 11411153 - 11411201
Alignment:
| Q |
169 |
tgtgctcataagctcctaagatggagttgaaatctcccataaagcacca |
217 |
Q |
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| T |
11411153 |
tgtgctcatgagctcctagaatagagttgaaatctcccataaaacacca |
11411201 |
T |
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