View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5316_high_34 (Length: 236)

Name: NF5316_high_34
Description: NF5316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5316_high_34
NF5316_high_34
[»] chr1 (8 HSPs)
chr1 (80-227)||(32645930-32646077)
chr1 (81-175)||(48996837-48996931)
chr1 (88-175)||(24965795-24965882)
chr1 (80-159)||(44488266-44488345)
chr1 (88-159)||(28541141-28541212)
chr1 (88-158)||(20007604-20007674)
chr1 (88-159)||(50907420-50907491)
chr1 (89-158)||(51391566-51391635)
[»] chr7 (11 HSPs)
chr7 (80-193)||(15826441-15826554)
chr7 (80-161)||(38455243-38455324)
chr7 (104-178)||(24576028-24576102)
chr7 (80-170)||(29033340-29033430)
chr7 (99-174)||(12345716-12345791)
chr7 (88-166)||(13552944-13553022)
chr7 (99-159)||(39561214-39561274)
chr7 (80-166)||(8231729-8231814)
chr7 (99-176)||(16728840-16728918)
chr7 (99-176)||(17705912-17705990)
chr7 (99-176)||(17715900-17715978)
[»] chr8 (7 HSPs)
chr8 (80-174)||(22721257-22721351)
chr8 (80-175)||(10529081-10529176)
chr8 (80-175)||(37230136-37230231)
chr8 (88-159)||(14094764-14094835)
chr8 (80-128)||(24617464-24617512)
chr8 (94-176)||(20520579-20520661)
chr8 (99-165)||(26488890-26488956)
[»] chr5 (4 HSPs)
chr5 (80-175)||(13271882-13271977)
chr5 (88-176)||(22553129-22553217)
chr5 (88-175)||(2740725-2740812)
chr5 (99-176)||(24211363-24211440)
[»] chr4 (7 HSPs)
chr4 (88-175)||(850424-850511)
chr4 (88-175)||(32310145-32310232)
chr4 (82-176)||(25556854-25556948)
chr4 (92-193)||(38649693-38649795)
chr4 (89-168)||(34981158-34981237)
chr4 (88-159)||(42562970-42563040)
chr4 (89-161)||(19819598-19819670)
[»] chr3 (3 HSPs)
chr3 (80-175)||(34440486-34440581)
chr3 (92-161)||(8694275-8694344)
chr3 (92-161)||(9046162-9046231)
[»] scaffold0010 (1 HSPs)
scaffold0010 (80-174)||(34550-34644)
[»] scaffold0695 (1 HSPs)
scaffold0695 (88-159)||(1614-1685)
[»] scaffold0046 (1 HSPs)
scaffold0046 (88-175)||(75116-75203)
[»] chr6 (3 HSPs)
chr6 (88-175)||(6288100-6288187)
chr6 (80-176)||(19222475-19222571)
chr6 (92-159)||(31020630-31020697)
[»] chr2 (2 HSPs)
chr2 (88-175)||(11815678-11815765)
chr2 (80-170)||(31119294-31119384)
[»] scaffold1212 (1 HSPs)
scaffold1212 (88-159)||(1584-1655)


Alignment Details
Target: chr1 (Bit Score: 136; Significance: 4e-71; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 80 - 227
Target Start/End: Complemental strand, 32646077 - 32645930
Alignment:
Q  80 gcaatgaggtaggataatcaacacttacttgatattgtcggagaaattgaccttgaagggcgcaagaatgaagaaaatcgcatttggaggggaaaaatcg 179  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  32646077 gcaatgaggtaggataatcaacacttacttgatattgtcggagaaattgactttgaatggcgcaagaatgaagaaaatcgcatttggaggggaaaaatcg 32645978  T
Q  180 tattttgagaagtttatttggaggggaaaaatcgtcgaatatgatgat 227  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||    
T  32645977 tattttgagaagtttatttggaggggaaaaattgtcgaatatgatgat 32645930  T

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Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 81 - 175
Target Start/End: Complemental strand, 48996931 - 48996837
Alignment:
Q  81 caatgaggtaggataatcaacacttacttgatattgtcggagaaattgaccttgaagggcgcaagaatgaagaaaatcgcatttggaggggaaaa 175  Q
    |||||| ||||| |||||| ||||||||||||||||| |||||||||| | ||||| ||||||||||||  |||||||||| |||||||||||||    
T  48996931 caatgaagtagggtaatcatcacttacttgatattgtgggagaaattggctttgaatggcgcaagaatggtgaaaatcgcacttggaggggaaaa 48996837  T

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Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 88 - 175
Target Start/End: Original strand, 24965795 - 24965882
Alignment:
Q  88 gtaggataatcaacacttacttgatattgtcggagaaattgaccttgaagggcgcaagaatgaagaaaatcgcatttggaggggaaaa 175  Q
    ||||||| |||| ||||||||||||||||| |||||||||| | ||||  ||||||||||||  |||||||||| ||||||| |||||    
T  24965795 gtaggatgatcatcacttacttgatattgtgggagaaattggctttgattggcgcaagaatggtgaaaatcgcacttggaggagaaaa 24965882  T

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Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 80 - 159
Target Start/End: Complemental strand, 44488345 - 44488266
Alignment:
Q  80 gcaatgaggtaggataatcaacacttacttgatattgtcggagaaattgaccttgaagggcgcaagaatgaagaaaatcg 159  Q
    ||||||| ||||| |||||| ||||||||||||||||| ||| |||||| | ||||| ||||||||||||  ||||||||    
T  44488345 gcaatgaagtagggtaatcatcacttacttgatattgtgggaaaaattggctttgaatggcgcaagaatggtgaaaatcg 44488266  T

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Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 88 - 159
Target Start/End: Original strand, 28541141 - 28541212
Alignment:
Q  88 gtaggataatcaacacttacttgatattgtcggagaaattgaccttgaagggcgcaagaatgaagaaaatcg 159  Q
    ||||| |||||| ||||||||||||||| | | |||||||| | ||||| ||||||||||||| ||||||||    
T  28541141 gtagggtaatcatcacttacttgatattttggaagaaattggctttgaatggcgcaagaatgatgaaaatcg 28541212  T

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Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 88 - 158
Target Start/End: Original strand, 20007604 - 20007674
Alignment:
Q  88 gtaggataatcaacacttacttgatattgtcggagaaattgaccttgaagggcgcaagaatgaagaaaatc 158  Q
    ||||||| |||| |||||||||||||||||  |||||| |||| ||||| | ||||||||||| |||||||    
T  20007604 gtaggatgatcatcacttacttgatattgtgagagaaaatgactttgaatgccgcaagaatgatgaaaatc 20007674  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 88 - 159
Target Start/End: Complemental strand, 50907491 - 50907420
Alignment:
Q  88 gtaggataatcaacacttacttgatattgtcggagaaattgaccttgaagggcgcaagaatgaagaaaatcg 159  Q
    ||||| |||||| | ||||||||||||| | | |||||||| | ||||| ||||||||||||| ||||||||    
T  50907491 gtagggtaatcatcgcttacttgatattttggaagaaattggctttgaatggcgcaagaatgatgaaaatcg 50907420  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 89 - 158
Target Start/End: Complemental strand, 51391635 - 51391566
Alignment:
Q  89 taggataatcaacacttacttgatattgtcggagaaattgaccttgaagggcgcaagaatgaagaaaatc 158  Q
    ||||||||||||| | |||||||| |||  |  ||||||||| ||||  |||||||||||||||||||||    
T  51391635 taggataatcaactcctacttgattttggggttgaaattgactttgattggcgcaagaatgaagaaaatc 51391566  T

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Target: chr7 (Bit Score: 70; Significance: 1e-31; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 80 - 193
Target Start/End: Original strand, 15826441 - 15826554
Alignment:
Q  80 gcaatgaggtaggataatcaacacttacttgatattgtcggagaaattgaccttgaagggcgcaagaatgaagaaaatcgcatttggaggggaaaaatcg 179  Q
    ||||||| ||||||||| |||||||||||||||||||| ||||||||| |  ||||| |||||||||||||||||||||||| ||||||||| |||||||    
T  15826441 gcaatgaagtaggataaacaacacttacttgatattgtgggagaaattcattttgaatggcgcaagaatgaagaaaatcgcagttggagggggaaaatcg 15826540  T
Q  180 tattttgagaagtt 193  Q
    ||||  ||||||||    
T  15826541 tattcggagaagtt 15826554  T

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Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 80 - 161
Target Start/End: Complemental strand, 38455324 - 38455243
Alignment:
Q  80 gcaatgaggtaggataatcaacacttacttgatattgtcggagaaattgaccttgaagggcgcaagaatgaagaaaatcgca 161  Q
    ||||||| ||||| |||||| ||||||||||||||||| |||||||||| | ||||| ||||||||||||  ||||||||||    
T  38455324 gcaatgaagtagggtaatcatcacttacttgatattgtgggagaaattggctttgaatggcgcaagaatggtgaaaatcgca 38455243  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 104 - 178
Target Start/End: Complemental strand, 24576102 - 24576028
Alignment:
Q  104 ttacttgatattgtcggagaaattgaccttgaagggcgcaagaatgaagaaaatcgcatttggaggggaaaaatc 178  Q
    ||||||||| |||| |||||||||||  ||||| ||||||||||||| |||||||||| ||| || |||||||||    
T  24576102 ttacttgatcttgtgggagaaattgagtttgaatggcgcaagaatgatgaaaatcgcacttgaagaggaaaaatc 24576028  T

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Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 80 - 170
Target Start/End: Complemental strand, 29033430 - 29033340
Alignment:
Q  80 gcaatgaggtaggataatcaacacttacttgatattgtcggagaaattgaccttgaagggcgcaagaatgaagaaaatcgcatttggaggg 170  Q
    ||||||| ||||| |||||| ||||||||||||||||| |||||||||  | ||||| ||| ||||||| | ||||||| || ||||||||    
T  29033430 gcaatgaagtagggtaatcatcacttacttgatattgtgggagaaattagctttgaatggcacaagaattatgaaaatcccacttggaggg 29033340  T

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Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 99 - 174
Target Start/End: Complemental strand, 12345791 - 12345716
Alignment:
Q  99 aacacttacttgatattgtcggagaaattgaccttgaagggcgcaagaatgaagaaaatcgcatttggaggggaaa 174  Q
    |||||||||||||| || | ||| |||||||| ||||| |||||||||||||  ||||||||| ||| ||||||||    
T  12345791 aacacttacttgattttatgggaaaaattgactttgaacggcgcaagaatgagcaaaatcgcacttgaaggggaaa 12345716  T

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Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 88 - 166
Target Start/End: Complemental strand, 13553022 - 13552944
Alignment:
Q  88 gtaggataatcaacacttacttgatattgtcggagaaattgaccttgaagggcgcaagaatgaagaaaatcgcatttgg 166  Q
    |||||||||||| ||||||||||||||||| |  ||||||| | || || ||||||||||||| |||| ||| ||||||    
T  13553022 gtaggataatcatcacttacttgatattgtggacgaaattggctttaaatggcgcaagaatgatgaaattcggatttgg 13552944  T

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Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 159
Target Start/End: Complemental strand, 39561274 - 39561214
Alignment:
Q  99 aacacttacttgatattgtcggagaaattgaccttgaagggcgcaagaatgaagaaaatcg 159  Q
    |||||||||||||| |||| |||||||||||| |  || || |||||||||||||||||||    
T  39561274 aacacttacttgattttgtgggagaaattgacttgaaatggtgcaagaatgaagaaaatcg 39561214  T

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Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 166
Target Start/End: Original strand, 8231729 - 8231814
Alignment:
Q  80 gcaatgaggtaggataatcaacacttacttgatattgtcggagaaattgaccttgaagggcgcaagaatgaagaaaatcgcatttgg 166  Q
    ||||||| ||||  |||| | |||||||||||||| || |||||||||| | ||||| ||||||||||||| |||| ||| ||||||    
T  8231729 gcaatgaagtagtttaataatcacttacttgatat-gtgggagaaattggctttgaatggcgcaagaatgatgaaattcggatttgg 8231814  T

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Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 176
Target Start/End: Original strand, 16728840 - 16728918
Alignment:
Q  99 aacacttacttgatattgtcggagaaattgacctt-gaagggcgcaagaatgaagaaaatcgcatttggaggggaaaaa 176  Q
    |||||||||||||| |||| ||||| ||||| ||| ||| | |||||||||||||||||| || || | ||||||||||    
T  16728840 aacacttacttgattttgtgggagacattgatctttgaatgacgcaagaatgaagaaaattgctttagaaggggaaaaa 16728918  T

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Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 176
Target Start/End: Original strand, 17705912 - 17705990
Alignment:
Q  99 aacacttacttgatattgtcggagaaattgacctt-gaagggcgcaagaatgaagaaaatcgcatttggaggggaaaaa 176  Q
    |||||||||||||| |||| ||||| ||||| ||| ||| | |||||||||||||||||| || || | ||||||||||    
T  17705912 aacacttacttgattttgtgggagacattgatctttgaatgacgcaagaatgaagaaaattgctttagaaggggaaaaa 17705990  T

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Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 176
Target Start/End: Original strand, 17715900 - 17715978
Alignment:
Q  99 aacacttacttgatattgtcggagaaattgacctt-gaagggcgcaagaatgaagaaaatcgcatttggaggggaaaaa 176  Q
    |||||||||||||| ||||  |||| ||||| ||| ||| |||||||||||||||||||| ||| | | ||||||||||    
T  17715900 aacacttacttgattttgtgagagacattgatctttgaatggcgcaagaatgaagaaaattgcactagaaggggaaaaa 17715978  T

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Target: chr8 (Bit Score: 59; Significance: 4e-25; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 80 - 174
Target Start/End: Complemental strand, 22721351 - 22721257
Alignment:
Q  80 gcaatgaggtaggataatcaacacttacttgatattgtcggagaaattgaccttgaagggcgcaagaatgaagaaaatcgcatttggaggggaaa 174  Q
    ||||||| |||||||||||| ||||||||||||||||| |||||||||| | ||||| | |||||||||||||||||||| |||||||| |||||    
T  22721351 gcaatgaagtaggataatcatcacttacttgatattgtgggagaaattggctttgaatgacgcaagaatgaagaaaatcggatttggagcggaaa 22721257  T

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Target: chr8; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 80 - 175
Target Start/End: Complemental strand, 10529176 - 10529081
Alignment:
Q  80 gcaatgaggtaggataatcaacacttacttgatattgtcggagaaattgaccttgaagggcgcaagaatgaagaaaatcgcatttggaggggaaaa 175  Q
    ||||||| ||||| |||||| ||||||||||||||||| |||||||||| | || || ||||||||||||  |||||||||| |||||||||||||    
T  10529176 gcaatgaagtagggtaatcatcacttacttgatattgtgggagaaattggctttaaatggcgcaagaatggtgaaaatcgcacttggaggggaaaa 10529081  T

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Target: chr8; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 80 - 175
Target Start/End: Original strand, 37230136 - 37230231
Alignment:
Q  80 gcaatgaggtaggataatcaacacttacttgatattgtcggagaaattgaccttgaagggcgcaagaatgaagaaaatcgcatttggaggggaaaa 175  Q
    ||||||| ||||| |||||| ||||||||||||||||| |||||||||| | ||||| | ||||||||||  |||||||| | |||||||||||||    
T  37230136 gcaatgaagtagggtaatcatcacttacttgatattgtgggagaaattggctttgaatgacgcaagaatggtgaaaatcgaacttggaggggaaaa 37230231  T

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Target: chr8; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 88 - 159
Target Start/End: Complemental strand, 14094835 - 14094764
Alignment:
Q  88 gtaggataatcaacacttacttgatattgtcggagaaattgaccttgaagggcgcaagaatgaagaaaatcg 159  Q
    ||||| |||||| ||||||||||||||||| |||||||||| | ||||| ||||||||||||| ||||||||    
T  14094835 gtagggtaatcatcacttacttgatattgtgggagaaattggctttgaatggcgcaagaatgatgaaaatcg 14094764  T

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Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 80 - 128
Target Start/End: Complemental strand, 24617512 - 24617464
Alignment:
Q  80 gcaatgaggtaggataatcaacacttacttgatattgtcggagaaattg 128  Q
    ||||||| ||||||||| |||||||||||||||||||| ||||||||||    
T  24617512 gcaatgaagtaggataagcaacacttacttgatattgtgggagaaattg 24617464  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 176
Target Start/End: Complemental strand, 20520661 - 20520579
Alignment:
Q  94 taatcaacacttacttgatattgtcggagaaattgaccttgaagggcgcaagaatgaagaaaatcgcatttggaggggaaaaa 176  Q
    |||||| ||||||||||||||| | | |||||||| | ||||| ||| ||||||||| |||||||  || ||| |||||||||    
T  20520661 taatcatcacttacttgatattttggaagaaattggctttgaatggcacaagaatgatgaaaatcagatatgggggggaaaaa 20520579  T

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Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 165
Target Start/End: Complemental strand, 26488956 - 26488890
Alignment:
Q  99 aacacttacttgatattgtcggagaaattgaccttgaagggcgcaagaatgaagaaaatcgcatttg 165  Q
    |||||||||||||| |||| ||||||||||||  |||| | |||||||||||  |||||| ||||||    
T  26488956 aacacttacttgattttgtgggagaaattgactatgaatgacgcaagaatgagcaaaatcacatttg 26488890  T

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Target: chr5 (Bit Score: 52; Significance: 6e-21; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 80 - 175
Target Start/End: Complemental strand, 13271977 - 13271882
Alignment:
Q  80 gcaatgaggtaggataatcaacacttacttgatattgtcggagaaattgaccttgaagggcgcaagaatgaagaaaatcgcatttggaggggaaaa 175  Q
    ||||||| ||||| |||||| ||||||||||||||||| |||||||||| | ||||| ||||||||||||  |||||||||| ||||| |||||||    
T  13271977 gcaatgaagtagggtaatcatcacttacttgatattgtgggagaaattggctttgaatggcgcaagaatggtgaaaatcgcacttggaagggaaaa 13271882  T

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Target: chr5; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 88 - 176
Target Start/End: Original strand, 22553129 - 22553217
Alignment:
Q  88 gtaggataatcaacacttacttgatattgtcggagaaattgaccttgaagggcgcaagaatgaagaaaatcgcatttggaggggaaaaa 176  Q
    |||||||||||| ||||||||||||||||| | |||||||| | ||||| ||| ||||||||| |||| ||  ||||||||||||||||    
T  22553129 gtaggataatcatcacttacttgatattgtggtagaaattggctttgaatggcacaagaatgatgaaattcagatttggaggggaaaaa 22553217  T

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Target: chr5; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 88 - 175
Target Start/End: Complemental strand, 2740812 - 2740725
Alignment:
Q  88 gtaggataatcaacacttacttgatattgtcggagaaattgaccttgaagggcgcaagaatgaagaaaatcgcatttggaggggaaaa 175  Q
    ||||| |||||| ||||||||||||||||| |||||||||| | ||||| ||  ||||||||  |||||||||| |||||||||||||    
T  2740812 gtagggtaatcatcacttacttgatattgtgggagaaattggctttgaatggtacaagaatggtgaaaatcgcacttggaggggaaaa 2740725  T

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Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 99 - 176
Target Start/End: Original strand, 24211363 - 24211440
Alignment:
Q  99 aacacttacttgatattgtcggagaaattgaccttgaagggcgcaagaatgaagaaaatcgcatttggaggggaaaaa 176  Q
    |||||||||||||| |||| |||||||||||| | ||| |||||||||||||| ||||| ||| ||| ||||||||||    
T  24211363 aacacttacttgattttgtgggagaaattgacttagaatggcgcaagaatgaacaaaattgcacttgaaggggaaaaa 24211440  T

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Target: chr4 (Bit Score: 52; Significance: 6e-21; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 88 - 175
Target Start/End: Original strand, 850424 - 850511
Alignment:
Q  88 gtaggataatcaacacttacttgatattgtcggagaaattgaccttgaagggcgcaagaatgaagaaaatcgcatttggaggggaaaa 175  Q
    ||||| |||||| ||||||||||||||||| |||||||||| | ||||| ||||||||||||  |||||||||| |||||||||||||    
T  850424 gtagggtaatcatcacttacttgatattgtgggagaaattggctttgaatggcgcaagaatggtgaaaatcgcacttggaggggaaaa 850511  T

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Target: chr4; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 88 - 175
Target Start/End: Original strand, 32310145 - 32310232
Alignment:
Q  88 gtaggataatcaacacttacttgatattgtcggagaaattgaccttgaagggcgcaagaatgaagaaaatcgcatttggaggggaaaa 175  Q
    ||||| |||||| ||||||||||||||||| |||||||||| | ||||| ||||||||||||  |||||||||| |||||||||||||    
T  32310145 gtagggtaatcatcacttacttgatattgtgggagaaattggctttgaatggcgcaagaatggtgaaaatcgcacttggaggggaaaa 32310232  T

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Target: chr4; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 82 - 176
Target Start/End: Original strand, 25556854 - 25556948
Alignment:
Q  82 aatgaggtaggataatcaacacttacttgatattgtcggagaaattgaccttgaagggcgcaagaatgaagaaaatcgcatttggaggggaaaaa 176  Q
    ||||| ||||||||| |||||||||||||||||||| |||||||||||| ||||| |||| || |||||||||||| | | |||||| |||||||    
T  25556854 aatgaagtaggataagcaacacttacttgatattgtgggagaaattgactttgaatggcgaaaaaatgaagaaaattgtacttggagaggaaaaa 25556948  T

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Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 92 - 193
Target Start/End: Complemental strand, 38649795 - 38649693
Alignment:
Q  92 gataatcaacacttacttgatattgtcggagaaattgaccttgaagggcgcaagaatgaagaaaatcgcatttggagggg-aaaaatcgtattttgagaa 190  Q
    |||||||| || |||||||||||||  |||||||||| | ||||||| || |||||||| |||||||||| ||| ||||| |||| | ||||||||||||    
T  38649795 gataatcatcatttacttgatattgcgggagaaattggctttgaaggacgtaagaatgatgaaaatcgcacttgaaggggcaaaatttgtattttgagaa 38649696  T
Q  191 gtt 193  Q
    |||    
T  38649695 gtt 38649693  T

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Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 89 - 168
Target Start/End: Original strand, 34981158 - 34981237
Alignment:
Q  89 taggataatcaacacttacttgatattgtcggagaaattgaccttgaagggcgcaagaatgaagaaaatcgcatttggag 168  Q
    ||||||||| |||||||||||||| ||   | |||||||||| ||||  |||||||||||||||||||||||| ||||||    
T  34981158 taggataataaacacttacttgattttagggtagaaattgacgttgagtggcgcaagaatgaagaaaatcgcacttggag 34981237  T

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Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 88 - 159
Target Start/End: Original strand, 42562970 - 42563040
Alignment:
Q  88 gtaggataatcaacacttacttgatattgtcggagaaattgaccttgaagggcgcaagaatgaagaaaatcg 159  Q
    ||||| |||||| ||||||||||||||||| |||||||||| | |||||  |||||||||||| ||||||||    
T  42562970 gtagggtaatcatcacttacttgatattgtgggagaaattggctttgaa-tgcgcaagaatgatgaaaatcg 42563040  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 161
Target Start/End: Complemental strand, 19819670 - 19819598
Alignment:
Q  89 taggataatcaacacttacttgatattgtcggagaaattgaccttgaagggcgcaagaatgaagaaaatcgca 161  Q
    |||||||||||||||||||||||| |||  | |||| ||||| ||||  ||| ||||| | ||||||||||||    
T  19819670 taggataatcaacacttacttgattttggggtagaagttgacgttgattggctcaagatttaagaaaatcgca 19819598  T

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Target: chr3 (Bit Score: 48; Significance: 1e-18; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 80 - 175
Target Start/End: Original strand, 34440486 - 34440581
Alignment:
Q  80 gcaatgaggtaggataatcaacacttacttgatattgtcggagaaattgaccttgaagggcgcaagaatgaagaaaatcgcatttggaggggaaaa 175  Q
    ||||||| |||||||||||| ||||||||||||||||| ||||   ||| | ||||| ||||||||||||  |||||||||| |||||||||||||    
T  34440486 gcaatgaagtaggataatcatcacttacttgatattgtaggagtttttggctttgaatggcgcaagaatggtgaaaatcgcacttggaggggaaaa 34440581  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 92 - 161
Target Start/End: Original strand, 8694275 - 8694344
Alignment:
Q  92 gataatcaacacttacttgatattgtcggagaaattgaccttgaagggcgcaagaatgaagaaaatcgca 161  Q
    |||||||||||||||||| || |||  | | |||||||| ||||  ||||||||||||||||||||||||    
T  8694275 gataatcaacacttacttaattttggggtacaaattgactttgattggcgcaagaatgaagaaaatcgca 8694344  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 92 - 161
Target Start/End: Original strand, 9046162 - 9046231
Alignment:
Q  92 gataatcaacacttacttgatattgtcggagaaattgaccttgaagggcgcaagaatgaagaaaatcgca 161  Q
    |||||||||||||||||| || |||  | | |||||||| ||||  ||||||||||||||||||||||||    
T  9046162 gataatcaacacttacttaattttggggtacaaattgactttgattggcgcaagaatgaagaaaatcgca 9046231  T

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Target: scaffold0010 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 80 - 174
Target Start/End: Original strand, 34550 - 34644
Alignment:
Q  80 gcaatgaggtaggataatcaacacttacttgatattgtcggagaaattgaccttgaagggcgcaagaatgaagaaaatcgcatttggaggggaaa 174  Q
    ||||||| |||||||||||| ||||||||||||||||| |||||||||| | | ||| ||||||||||||  ||||||| || ||| ||||||||    
T  34550 gcaatgaagtaggataatcatcacttacttgatattgtgggagaaattggcttggaatggcgcaagaatggtgaaaatctcacttgcaggggaaa 34644  T

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Target: scaffold0695 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0695
Description:

Target: scaffold0695; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 88 - 159
Target Start/End: Original strand, 1614 - 1685
Alignment:
Q  88 gtaggataatcaacacttacttgatattgtcggagaaattgaccttgaagggcgcaagaatgaagaaaatcg 159  Q
    ||||| |||||| ||||||||||||||||| |||||||||| | ||||| ||||||||||||| ||||||||    
T  1614 gtagggtaatcatcacttacttgatattgtgggagaaattggctttgaatggcgcaagaatgatgaaaatcg 1685  T

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Target: scaffold0046 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0046
Description:

Target: scaffold0046; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 88 - 175
Target Start/End: Original strand, 75116 - 75203
Alignment:
Q  88 gtaggataatcaacacttacttgatattgtcggagaaattgaccttgaagggcgcaagaatgaagaaaatcgcatttggaggggaaaa 175  Q
    ||||||| |||| ||||||||||||||||| |||||||||| | ||||  ||||||||||||  |||||||||| ||||||| |||||    
T  75116 gtaggatgatcatcacttacttgatattgtgggagaaattggctttgattggcgcaagaatggtgaaaatcgcacttggaggagaaaa 75203  T

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Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 88 - 175
Target Start/End: Original strand, 6288100 - 6288187
Alignment:
Q  88 gtaggataatcaacacttacttgatattgtcggagaaattgaccttgaagggcgcaagaatgaagaaaatcgcatttggaggggaaaa 175  Q
    ||||| |||||| ||||||||||||||||| |||||||||| | ||||| || |||||||||  | |||||||| |||||||||||||    
T  6288100 gtagggtaatcatcacttacttgatattgtgggagaaattggctttgaatggtgcaagaatggtgtaaatcgcacttggaggggaaaa 6288187  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 80 - 176
Target Start/End: Complemental strand, 19222571 - 19222475
Alignment:
Q  80 gcaatgaggtaggataatcaacacttacttgatattgtcggagaaattgaccttgaagggcgcaagaatgaagaaaatcgcatttggaggggaaaaa 176  Q
    ||||||| ||||||||||||  ||||| || ||||||| || ||||||| | ||||| ||||||||||||| |||| ||| ||||||||||| ||||    
T  19222571 gcaatgaagtaggataatcattacttattttatattgtgggtgaaattggctttgaatggcgcaagaatgatgaaattcgaatttggagggggaaaa 19222475  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 159
Target Start/End: Complemental strand, 31020697 - 31020630
Alignment:
Q  92 gataatcaacacttacttgatattgtcggagaaattgaccttgaagggcgcaagaatgaagaaaatcg 159  Q
    ||||| ||||||||||||||| |||| | ||| ||||| |||||  ||| ||||||||||||||||||    
T  31020697 gataagcaacacttacttgattttgtggtagatattgagcttgattggcacaagaatgaagaaaatcg 31020630  T

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Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 88 - 175
Target Start/End: Complemental strand, 11815765 - 11815678
Alignment:
Q  88 gtaggataatcaacacttacttgatattgtcggagaaattgaccttgaagggcgcaagaatgaagaaaatcgcatttggaggggaaaa 175  Q
    ||||| |||||| ||||||||||||||||| |||||||||| | ||||| ||||||||||||  |||||| |||  ||||||||||||    
T  11815765 gtagggtaatcatcacttacttgatattgtgggagaaattggctttgaatggcgcaagaatggtgaaaattgcacctggaggggaaaa 11815678  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 80 - 170
Target Start/End: Original strand, 31119294 - 31119384
Alignment:
Q  80 gcaatgaggtaggataatcaacacttacttgatattgtcggagaaattgaccttgaagggcgcaagaatgaagaaaatcgcatttggaggg 170  Q
    ||||||| ||||  |||||| |||||||||||||||||  ||||||||| | ||||| || |||||||||  |||||||||| || |||||    
T  31119294 gcaatgaagtagattaatcatcacttacttgatattgtgagagaaattggctttgaatggtgcaagaatggtgaaaatcgcacttagaggg 31119384  T

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Target: scaffold1212 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold1212
Description:

Target: scaffold1212; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 88 - 159
Target Start/End: Original strand, 1584 - 1655
Alignment:
Q  88 gtaggataatcaacacttacttgatattgtcggagaaattgaccttgaagggcgcaagaatgaagaaaatcg 159  Q
    ||||| |||||| ||||||||||||||| | | |||||||||| ||||| ||||||||||||| ||||||||    
T  1584 gtagggtaatcatcacttacttgatattttggaagaaattgactttgaatggcgcaagaatgatgaaaatcg 1655  T

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