View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5316_low_10 (Length: 448)
Name: NF5316_low_10
Description: NF5316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5316_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 147 - 434
Target Start/End: Complemental strand, 37752083 - 37751798
Alignment:
| Q |
147 |
aataattttatccagttgtttaatcagattttactatttacattttttcgtaggtatttaaaggtaatttattaaggtgcaagtttcaaatgtttattcg |
246 |
Q |
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| T |
37752083 |
aataattttatccagttgtttaatcagattttactatttacattttttcgtaggtatttaaaggtaatttattaaggtgcaagtttcaaatgtttattcg |
37751984 |
T |
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| Q |
247 |
aaaaaatattgcaaaaattgagccaaaagtaaataaacttcataatctttgtagaccatcacggttttcccccaattttggggtatggatgtaaattcga |
346 |
Q |
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| T |
37751983 |
aaaaaatattgcaaaaattgagccaaaagtaaataaacttcataatctttgtaggccatcacggtttccccccaattttggggtatggatgtaaattcga |
37751884 |
T |
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| Q |
347 |
ttggcatcaacactcgcannnnnnnnnnnnnnnaagggactcacatatgtatattttaaaataatactattattatacaagttaaaat |
434 |
Q |
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| T |
37751883 |
ttggcatcaacactcgga--ttttttttttttgaagggactcacatatgtatattttaaaataatactattattatacaagttaaaat |
37751798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 103 - 155
Target Start/End: Complemental strand, 37752523 - 37752471
Alignment:
| Q |
103 |
aaaggatgaataattagaaaagaaattatttgcatatagtgtaaaataatttt |
155 |
Q |
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| T |
37752523 |
aaaggatgaataattagaaaagaaattatttgcatatagtgtaaaataatttt |
37752471 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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