View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5316_low_14 (Length: 410)
Name: NF5316_low_14
Description: NF5316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5316_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 396
Target Start/End: Original strand, 41101394 - 41101789
Alignment:
| Q |
1 |
ccatttttgcctgttaattgaattccttttttcccgatttgatttagtggtagcaagaatcacatggtttgtttgcgtttttgttctttaggggaggttt |
100 |
Q |
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| T |
41101394 |
ccatttttgccttttaattgaattccttttttccctatttgatttcgtggtgacaagaatcacatgttttgtttgcgtttttgttctttaggagaggttt |
41101493 |
T |
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| Q |
101 |
gacctgtgttgttttgctgggcgaattttgtcctgctgagattgtatttttaagcgtgtactgtaacaggaggtgtttgtgtagttttggtaggtgttgt |
200 |
Q |
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|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |
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| T |
41101494 |
gatctgtgttgttttgctgggcgaattttgtcctgttgagattgtatttttaagcgtttactgtaacaggaggggtttgtgtagttttggtaggtgttgt |
41101593 |
T |
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| Q |
201 |
tatgttgggggcgtgaggatgctttattctcctctgtaattttgagctcatcccactatctttgtggaagctcttttcatatatataatatgctgttnnn |
300 |
Q |
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| T |
41101594 |
tatgttgggggcgtgaggatgctttattgtcctctgtaattttgagctcatcccactatctttgtggaagctcttttcatatatataatatgctgttaaa |
41101693 |
T |
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| Q |
301 |
nnnnntagcatgatctccattgttcattatgtattgctgttacacacttcttccattttgttcattatttgtgttgttgttacaaacttctttgat |
396 |
Q |
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| T |
41101694 |
aaaaatagcatgatctccattgttcattatgtattgctcttacacacctcttccattttgttcattatttgtgttgttgttacaaacttctttgat |
41101789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 338 - 396
Target Start/End: Original strand, 39577959 - 39578017
Alignment:
| Q |
338 |
tgttacacacttcttccattttgttcattatttgtgttgttgttacaaacttctttgat |
396 |
Q |
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| T |
39577959 |
tgttacacacttcttccattttgttcattatctatgttgatgttacaaacttctttgat |
39578017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 338 - 393
Target Start/End: Complemental strand, 33239299 - 33239244
Alignment:
| Q |
338 |
tgttacacacttcttccattttgttcattatttgtgttgttgttacaaacttcttt |
393 |
Q |
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| T |
33239299 |
tgttacacacttcttccattttgttcattatctatgttgatgttacaaacttcttt |
33239244 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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