View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5316_low_17 (Length: 399)

Name: NF5316_low_17
Description: NF5316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5316_low_17
NF5316_low_17
[»] chr2 (6 HSPs)
chr2 (178-384)||(12853530-12853736)
chr2 (178-382)||(6707430-6707634)
chr2 (9-91)||(12853363-12853444)
chr2 (9-91)||(6707719-6707800)
chr2 (9-91)||(23178143-23178223)
chr2 (9-91)||(23589400-23589480)
[»] chr1 (3 HSPs)
chr1 (178-384)||(26055401-26055607)
chr1 (9-119)||(26055663-26055772)
chr1 (14-83)||(1616476-1616544)
[»] chr3 (3 HSPs)
chr3 (178-384)||(11220065-11220271)
chr3 (9-91)||(11219898-11219977)
chr3 (9-55)||(42633137-42633182)
[»] chr6 (1 HSPs)
chr6 (12-91)||(34083791-34083869)
[»] chr8 (1 HSPs)
chr8 (9-91)||(45541973-45542054)
[»] scaffold1974 (1 HSPs)
scaffold1974 (9-91)||(196-276)
[»] scaffold1878 (1 HSPs)
scaffold1878 (9-91)||(998-1078)
[»] scaffold0290 (1 HSPs)
scaffold0290 (9-91)||(9108-9188)
[»] scaffold0051 (1 HSPs)
scaffold0051 (9-86)||(39468-39544)
[»] chr5 (1 HSPs)
chr5 (63-91)||(18694126-18694154)


Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 178 - 384
Target Start/End: Original strand, 12853530 - 12853736
Alignment:
Q  178 ttatctctccttgttgcatgattctaaatcaaacacaacaccacacccaacaccgaaacacacaaattagatggaacaaaccagaagctgattatgtaaa 277  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12853530 ttatctctccttgttgcatgattctaaatcaaacacaacaccacacccaacaccgaaacacacaaattagatggaacaaaccagaagctgattatgtaaa 12853629  T
Q  278 agctaatagtgatgctaatctgtctgaaattgatacctggggattaggggcagtagttcgagagggactgtgataaactcgtaaaaagggtgaatggaag 377  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||    
T  12853630 agctaatagtgatgctaatttgtctgaaattgatacctggggattaggggcagtagttcgagagtgactgtgataaactcgtaaaaagggtgaacggaag 12853729  T
Q  378 tgtttct 384  Q
    |||||||    
T  12853730 tgtttct 12853736  T

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Target: chr2; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 178 - 382
Target Start/End: Complemental strand, 6707634 - 6707430
Alignment:
Q  178 ttatctctccttgttgcatgattctaaatcaaacacaacaccacacccaacaccgaaacacacaaattagatggaacaaaccagaagctgattatgtaaa 277  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6707634 ttatctctccttgttgcatgattctaaatcaaacacaacaccacacccaacaccgaaacacacaaattagatggaacaaaccagaagctgattatgtaaa 6707535  T
Q  278 agctaatagtgatgctaatctgtctgaaattgatacctggggattaggggcagtagttcgagagggactgtgataaactcgtaaaaagggtgaatggaag 377  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||    
T  6707534 agctaatagtgatgctaatttgtctgaaattgatacctggggattaggggcagtagttcgagagtgactgcgataaactcgtaaaaagggtgaacggaag 6707435  T
Q  378 tgttt 382  Q
    |||||    
T  6707434 tgttt 6707430  T

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Target: chr2; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 9 - 91
Target Start/End: Original strand, 12853363 - 12853444
Alignment:
Q  9 atcatcatcaatagcagcaacaacacatcaagaaatcaaattcaaccnnnnnnnaattcttttcatcatcatcatcatgaatt 91  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||    
T  12853363 atcatcatcaatatcagcaacaacacatcaagaaatcaaattcaacc-ttttttaattcttttcatcatcatcatcatgaatt 12853444  T

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Target: chr2; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 9 - 91
Target Start/End: Complemental strand, 6707800 - 6707719
Alignment:
Q  9 atcatcatcaatagcagcaacaacacatcaagaaatcaaattcaaccnnnnnnnaattcttttcatcatcatcatcatgaatt 91  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||        ||||||||||||||||||||||||||||    
T  6707800 atcatcatcaatagcagcaacaacacatcaaaaaatcaaattcaaccctttttt-attcttttcatcatcatcatcatgaatt 6707719  T

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Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 9 - 91
Target Start/End: Original strand, 23178143 - 23178223
Alignment:
Q  9 atcatcatcaatagcagcaacaacacatcaagaaatcaaattcaaccnnnnnnnaattcttttcatcatcatcatcatgaatt 91  Q
    |||||||||||||| || |||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||    
T  23178143 atcatcatcaatag-agtaacaacacatcaagaaatcaaattcaaccctttttg-attcttttcatcatcatcatcatgaatt 23178223  T

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Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 9 - 91
Target Start/End: Original strand, 23589400 - 23589480
Alignment:
Q  9 atcatcatcaatagcagcaacaacacatcaagaaatcaaattcaaccnnnnnnnaattcttttcatcatcatcatcatgaatt 91  Q
    |||||||||||||| || |||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||    
T  23589400 atcatcatcaatag-agtaacaacacatcaagaaatcaaattcaaccctttttg-attcttttcatcatcatcatcatgaatt 23589480  T

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Target: chr1 (Bit Score: 171; Significance: 1e-91; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 178 - 384
Target Start/End: Complemental strand, 26055607 - 26055401
Alignment:
Q  178 ttatctctccttgttgcatgattctaaatcaaacacaacaccacacccaacaccgaaacacacaaattagatggaacaaaccagaagctgattatgtaaa 277  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  26055607 ttatctctccttgttgcatgattctaaatcaaacacaacaccacacccaacaccgaaacgcacaaattagatggaacaaaccagaagctgattatgtaaa 26055508  T
Q  278 agctaatagtgatgctaatctgtctgaaattgatacctggggattaggggcagtagttcgagagggactgtgataaactcgtaaaaagggtgaatggaag 377  Q
    ||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |||| |||||||||||||| ||||||||||||||   |||    
T  26055507 agctaatagtgatgctaatttgtctgaaattgatacatggggattaggggcagtagttccagagtgactgtgataaacttgtaaaaagggtgaacataag 26055408  T
Q  378 tgtttct 384  Q
    |||||||    
T  26055407 tgtttct 26055401  T

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Target: chr1; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 9 - 119
Target Start/End: Complemental strand, 26055772 - 26055663
Alignment:
Q  9 atcatcatcaatagcagcaacaacacatcaagaaatcaaattcaaccnnnnnnnaattcttttcatcatcatcatcatgaattnnnnnnnntggatttct 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||        |||||||||    
T  26055772 atcatcatcaatagcagcaacaacacatcaagaaatcaaattcaaccctttttg-attcttttcatcatcatcatcatgaattaaaaaaaatggatttct 26055674  T
Q  109 ccaaattcagc 119  Q
    |||||||||||    
T  26055673 ccaaattcagc 26055663  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 14 - 83
Target Start/End: Original strand, 1616476 - 1616544
Alignment:
Q  14 catcaatagcagcaacaacacatcaagaaatcaaattcaaccnnnnnnnaattcttttcatcatcatcat 83  Q
    |||||||||||||||||||||||||| |||||||||||||||       |||||||||||||||||||||    
T  1616476 catcaatagcagcaacaacacatcaaaaaatcaaattcaacc-cttttgaattcttttcatcatcatcat 1616544  T

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Target: chr3 (Bit Score: 159; Significance: 1e-84; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 178 - 384
Target Start/End: Original strand, 11220065 - 11220271
Alignment:
Q  178 ttatctctccttgttgcatgattctaaatcaaacacaacaccacacccaacaccgaaacacacaaattagatggaacaaaccagaagctgattatgtaaa 277  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||    
T  11220065 ttatctctccttgttgcatgattctaaatcaaacacaacaccacacccaacaccgaatcgcacaaattagatggaacaaaccagaagctgattatgtaaa 11220164  T
Q  278 agctaatagtgatgctaatctgtctgaaattgatacctggggattaggggcagtagttcgagagggactgtgataaactcgtaaaaagggtgaatggaag 377  Q
    || |||||||||||||||| |||||||||||||||| |||||||||||||||||| |||||||| |||||||||||||| |||| ||||||| | | |||    
T  11220165 agataatagtgatgctaatttgtctgaaattgatacatggggattaggggcagtaattcgagagtgactgtgataaacttgtaagaagggtgtacgaaag 11220264  T
Q  378 tgtttct 384  Q
    |||||||    
T  11220265 tgtttct 11220271  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 9 - 91
Target Start/End: Original strand, 11219898 - 11219977
Alignment:
Q  9 atcatcatcaatagcagcaacaacacatcaagaaatcaaattcaaccnnnnnnnaattcttttcatcatcatcatcatgaatt 91  Q
    ||||||||| |||||||||||||||  ||||||||||||||||||||        ||||||||||||||||||||||||||||    
T  11219898 atcatcatctatagcagcaacaaca--tcaagaaatcaaattcaaccatttttg-attcttttcatcatcatcatcatgaatt 11219977  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 55
Target Start/End: Original strand, 42633137 - 42633182
Alignment:
Q  9 atcatcatcaatagcagcaacaacacatcaagaaatcaaattcaacc 55  Q
    ||||||||||||||| ||| |||||||||||||||||| ||||||||    
T  42633137 atcatcatcaatagc-gcatcaacacatcaagaaatcatattcaacc 42633182  T

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Target: chr6 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 12 - 91
Target Start/End: Complemental strand, 34083869 - 34083791
Alignment:
Q  12 atcatcaatagcagcaacaacacatcaagaaatcaaattcaaccnnnnnnnaattcttttcatcatcatcatcatgaatt 91  Q
    ||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||    
T  34083869 atcatcaatagcagcaacaacacatcaagaaatcaaattcaaccctttttt-attcttttcatcatcatcatcatgaatt 34083791  T

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Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 9 - 91
Target Start/End: Original strand, 45541973 - 45542054
Alignment:
Q  9 atcatcatcaatagcagcaacaacacatcaagaaatcaaattcaaccnnnnnnnaattcttttcatcatcatcatcatgaatt 91  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||        ||||||||||||||||||||||||||||    
T  45541973 atcatcatcaatagcagcaacaacacatcaagaaatcaaaatcaaccatttttt-attcttttcatcatcatcatcatgaatt 45542054  T

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Target: scaffold1974 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: scaffold1974
Description:

Target: scaffold1974; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 9 - 91
Target Start/End: Complemental strand, 276 - 196
Alignment:
Q  9 atcatcatcaatagcagcaacaacacatcaagaaatcaaattcaaccnnnnnnnaattcttttcatcatcatcatcatgaatt 91  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||    
T  276 atcatcatcaatag-agcaacaacacatcaagaaatcaaattcaacc-ctttttaattcttttcatcatcatcatcatgaatt 196  T

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Target: scaffold1878 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: scaffold1878
Description:

Target: scaffold1878; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 9 - 91
Target Start/End: Original strand, 998 - 1078
Alignment:
Q  9 atcatcatcaatagcagcaacaacacatcaagaaatcaaattcaaccnnnnnnnaattcttttcatcatcatcatcatgaatt 91  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||    
T  998 atcatcatcaatag-agcaacaacacatcaagaaatcaaattcaacc-ctttttaattcttttcatcatcatcatcatgaatt 1078  T

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Target: scaffold0290 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: scaffold0290
Description:

Target: scaffold0290; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 9 - 91
Target Start/End: Complemental strand, 9188 - 9108
Alignment:
Q  9 atcatcatcaatagcagcaacaacacatcaagaaatcaaattcaaccnnnnnnnaattcttttcatcatcatcatcatgaatt 91  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||    
T  9188 atcatcatcaatag-agcaacaacacatcaagaaatcaaattcaacc-ctttttaattcttttcatcatcatcatcatgaatt 9108  T

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Target: scaffold0051 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 9 - 86
Target Start/End: Complemental strand, 39544 - 39468
Alignment:
Q  9 atcatcatcaatagcagcaacaacacatcaagaaatcaaattcaaccnnnnnnnaattcttttcatcatcatcatcat 86  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||        |||||||||||||||||||||||    
T  39544 atcatcatcaatagcagcaacaacacatcaagaaatcaaagtcaaccctttttt-attcttttcatcatcatcatcat 39468  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 63 - 91
Target Start/End: Original strand, 18694126 - 18694154
Alignment:
Q  63 aattcttttcatcatcatcatcatgaatt 91  Q
    |||||||||||||||||||||||||||||    
T  18694126 aattcttttcatcatcatcatcatgaatt 18694154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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