View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5316_low_18 (Length: 379)
Name: NF5316_low_18
Description: NF5316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5316_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 9 - 365
Target Start/End: Original strand, 35693769 - 35694130
Alignment:
| Q |
9 |
gaagaatataagcttatagatcctgaagnnnnnnnttgatgaaaagtggctgatgctgttgagaaaaccatgagcattttccagagagctt----gagtt |
104 |
Q |
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| T |
35693769 |
gaagaaaataagcttatagatcctgaagaaaaaaattgatgaaaagtggctgatgctgttgagaaaaccaagagcattttccagagagcttgcttgagtt |
35693868 |
T |
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| Q |
105 |
agcgaaagaaaattttgtgatgcaaaagagggagggaatttggttcataataggggagaggattggaaatttccttataactttctcttagt----tgca |
200 |
Q |
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| T |
35693869 |
agtgaaagaaaattttgtgatgcaaaagagggagggagtttggttcataataggggagaggattggaaatttccttataactttctcttagttgcatgca |
35693968 |
T |
|
| Q |
201 |
ttattgttagcttattacattagaaactaactaaagcctatccaaactaatcatctgctatactattcacaatctctcatctaataacaatttcagcaaa |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
35693969 |
ttattgttagcttattacattagaaactaactaaagcctatccaaactaatcatctgctatactattcacaatctctcatc---taacaatttcagcaaa |
35694065 |
T |
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| Q |
301 |
tgtgcaaacttgcgccccaagctacaatacaagttcctgcataattcgcttagctcgattgtgtg |
365 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35694066 |
tgtgcaaacttgcgccccaagctacaatacaagttcctgcataattcgcttagctcgattgtgtg |
35694130 |
T |
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