View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5316_low_2 (Length: 726)
Name: NF5316_low_2
Description: NF5316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5316_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 79; Significance: 1e-36; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 597 - 707
Target Start/End: Original strand, 18299726 - 18299836
Alignment:
| Q |
597 |
gttccactaactcacttgccttaacaaacccatcttcattgtctttcaaagccaaagcaaccttcatctcttccaccattacaaccctattcaatctttg |
696 |
Q |
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| T |
18299726 |
gttccacaaactcacttgcatgaacaaacccatcttcattctctttcaaagccaaagcaaccttcatctcttccaccactacaaccctattcaacctttg |
18299825 |
T |
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| Q |
697 |
ctgtgcataaa |
707 |
Q |
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| T |
18299826 |
ctccgcataaa |
18299836 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 80 - 171
Target Start/End: Original strand, 18297886 - 18297976
Alignment:
| Q |
80 |
taaattactaacacttaataattacaaaatacaccattacaacattttatttcgtatttactaacaatgtttttaaaaaataacggttatat |
171 |
Q |
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| T |
18297886 |
taaattactaacacttaataattacaaaatacaatattacaacattttatttcgtatttactaaaaatg-ttttaaaaaataacgcttatat |
18297976 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 384 - 483
Target Start/End: Original strand, 18298103 - 18298201
Alignment:
| Q |
384 |
aaacattgaattaatatgtcatcgtaactcatttcgtccgaaaataaaat-aaatttgtgcattcaagaagactaacaaattttgaaaaatacaaagtat |
482 |
Q |
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| T |
18298103 |
aaacattgaatcaatgtgtcatcataactcactttgtccgaaaataaaataaaatttgtgcattcgagaagacttataaattttg--aaatacaaagtat |
18298200 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 207 - 272
Target Start/End: Original strand, 18297979 - 18298048
Alignment:
| Q |
207 |
aaacattacatatacatataatttataataattaca----ctagtacttaagttataacaaaattaaaaa |
272 |
Q |
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| T |
18297979 |
aaacattacctatacatataatttataataattatactagctagtacttaagttataataaaattaaaaa |
18298048 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 400 - 456
Target Start/End: Original strand, 18298403 - 18298460
Alignment:
| Q |
400 |
tgtcatcgtaactcatttcgtccgaaaat-aaaataaatttgtgcattcaagaagact |
456 |
Q |
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| T |
18298403 |
tgtcatcataactcacttcgtccgaaaataaaaataaatttgtgcatgcaagaagact |
18298460 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 324 - 365
Target Start/End: Original strand, 18298072 - 18298113
Alignment:
| Q |
324 |
gttagtcttgcatcatgataaattcatttttaaacattgaat |
365 |
Q |
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| T |
18298072 |
gttaatcttgcatcatgataaaatcatttttaaacattgaat |
18298113 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 9491247 - 9491303
Alignment:
| Q |
17 |
tggacctccactcaatatctctaccaacatcatactagcactcttaaaattcacaat |
73 |
Q |
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| T |
9491247 |
tggacctccacttagtgtctccaccaacaccatactagcactcttaaaattcacaat |
9491303 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 11790913 - 11790971
Alignment:
| Q |
17 |
tggacctccactcaatatctctaccaacatcatactagcactcttaaaattcacaatag |
75 |
Q |
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| T |
11790913 |
tggacctccacttagtgtctccaccaacaccgtactagcactcttaaaattcacaatag |
11790971 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 17 - 75
Target Start/End: Complemental strand, 7103685 - 7103627
Alignment:
| Q |
17 |
tggacctccactcaatatctctaccaacatcatactagcactcttaaaattcacaatag |
75 |
Q |
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| T |
7103685 |
tggacctccacttagtgtatccaccaacatcgtactagcactcttaaaattcccaatag |
7103627 |
T |
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