View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5316_low_23 (Length: 328)
Name: NF5316_low_23
Description: NF5316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5316_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 1542578 - 1542364
Alignment:
| Q |
1 |
taaccatcgataatttcatctctggtggcgtcaccatcaggagtctccataatcacaagccagtgttcaaaatcacatccatcaagcaagatggtttcct |
100 |
Q |
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| T |
1542578 |
taaccatcgataatttcatctctggtggcgtcaccatcaggagtctccataatcacaagccagtgttcaaaatcacatccatcaagcaagatggtttcct |
1542479 |
T |
|
| Q |
101 |
taggaggatggttagaccagttagacttttgatcgttgagggaagaggtggtaggtcttgttgagagagcgcggaaggaaggaaggagaatgtggcagga |
200 |
Q |
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|||||| | ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
1542478 |
taggagaagggttagaccagttagggttttgatcgttgagggaagaggtggtaggtcttgttgagagagcgcggaaggaaggaaggagaatgtggcggga |
1542379 |
T |
|
| Q |
201 |
ggttacggcagcggc |
215 |
Q |
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||||||||||||||| |
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| T |
1542378 |
ggttacggcagcggc |
1542364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 283 - 317
Target Start/End: Complemental strand, 1542296 - 1542262
Alignment:
| Q |
283 |
ggagttagggttttaggaatgacacgagtgatgat |
317 |
Q |
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| T |
1542296 |
ggagttagggttttaggaatgacacgagtgatgat |
1542262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 99; Significance: 8e-49; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 32424468 - 32424254
Alignment:
| Q |
1 |
taaccatcgataatttcatctctggtggcgtcaccatcaggagtctccataatcacaagccagtgttcaaaatcacatccatcaagcaagatggtttcct |
100 |
Q |
| |
|
|||||||||||||||||||||||| | | ||||||||||| || ||||| ||| |||||||||||||||| ||||||| ||||| || ||| | || |
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| T |
32424468 |
taaccatcgataatttcatctctgctaggatcaccatcaggcttccacataaccacgagccagtgttcaaaattgcatccattaagcacgacggtatgct |
32424369 |
T |
|
| Q |
101 |
taggaggatggttagaccagttagacttttgatcgttgagggaagaggtggtaggtcttgttgagagagcgcggaaggaaggaaggagaatgtggcagga |
200 |
Q |
| |
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|||| ||| ||||| | ||||||| |||||||||||||||||||| |||||||| ||||||||||| | |||||||||||| ||||||||||||| ||| |
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| T |
32424368 |
taggtggacggttatagcagttagggttttgatcgttgagggaagatgtggtagggcttgttgagagtgtgcggaaggaagggaggagaatgtggcggga |
32424269 |
T |
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| Q |
201 |
ggttacggcagcggc |
215 |
Q |
| |
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||||||||||||||| |
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| T |
32424268 |
ggttacggcagcggc |
32424254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 32419237 - 32419035
Alignment:
| Q |
1 |
taaccatcgataatttcatctctggtggcgtcaccatcaggagtctccataatcacaagccagtgttcaaaatcacatccatcaagcaagatggtttcct |
100 |
Q |
| |
|
|||| ||| ||||| ||||||||||| | ||||| ||||| ||||||| | |||||||||||||||||||| |||||||| ||||| || ||||||| |
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| T |
32419237 |
taactatcaataatctcatctctggtaggatcaccttcaggcttctccatcacaacaagccagtgttcaaaatcgcatccatcgagcaaaatcgtttcct |
32419138 |
T |
|
| Q |
101 |
taggaggatggttagaccagttagacttttgatcgttgagggaagaggtggtaggtcttgttgagagagcgcggaaggaaggaaggagaatgtggcagga |
200 |
Q |
| |
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| || ||| | |||||||| |||| || ||||||||||||||||||||||||| | ||| |||| ||||||||||||||| ||||| ||||| | ||| |
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|
| T |
32419137 |
ttggtggacgattagaccaattagggttaggatcgttgagggaagaggtggtagggcgtgtggagaaagcgcggaaggaagggaggaggatgtgacggga |
32419038 |
T |
|
| Q |
201 |
ggt |
203 |
Q |
| |
|
||| |
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|
| T |
32419037 |
ggt |
32419035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 283 - 317
Target Start/End: Complemental strand, 32424195 - 32424161
Alignment:
| Q |
283 |
ggagttagggttttaggaatgacacgagtgatgat |
317 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| |
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|
| T |
32424195 |
ggagttagggttttaggaatgacaagagtgatgat |
32424161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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