View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5316_low_28 (Length: 273)
Name: NF5316_low_28
Description: NF5316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5316_low_28 |
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Alignment Details
Target: chr1 (Bit Score: 121; Significance: 5e-62; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 116 - 268
Target Start/End: Complemental strand, 28638032 - 28637880
Alignment:
| Q |
116 |
gcaaaattaataggtgagatttttgtttaaaaatgtgagcggagtagtaaaacctggaagattattaacgataatgggacctttaagttcagagaagaca |
215 |
Q |
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| T |
28638032 |
gcaaaattaataggtgagatttttgcttaaaaatgtgagcggagtagcaaaacctggaagattattaacgataatggaaccttcaagttcagagaagaca |
28637933 |
T |
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| Q |
216 |
acattgctcaatgttcttgttggtctgctgtctgcatcgcctcggcttcatct |
268 |
Q |
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| T |
28637932 |
atatttctcattgttcttgttggtctgctggctgcatcgcctcggcttcatct |
28637880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 119 - 266
Target Start/End: Original strand, 48943239 - 48943386
Alignment:
| Q |
119 |
aaattaataggtgagatttttgtttaaaaatgtgagcggagtagtaaaacctggaagattattaacgataatgggacctttaagttcagagaagacaaca |
218 |
Q |
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| T |
48943239 |
aaatgaataggtgagatttttgcttaaaaatctgagtggagaagcaaaaccgggaagattattagcaataatgggaccttcaggttcagggaagacaaca |
48943338 |
T |
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| Q |
219 |
ttgctcaatgttcttgttggtctgctgtctgcatcgcctcggcttcat |
266 |
Q |
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| T |
48943339 |
ttgctcaatgttcttgctggtcagctatcagcgtcacctcggcttcat |
48943386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 7 - 62
Target Start/End: Complemental strand, 28638141 - 28638086
Alignment:
| Q |
7 |
tttactttggatgtttattttattgttgcatgcacgtagttgtgttgctttatgga |
62 |
Q |
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| T |
28638141 |
tttactttggatgtttattttattgttgcatgcacgtagttgtgttgctttatgga |
28638086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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