View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5316_low_29 (Length: 262)
Name: NF5316_low_29
Description: NF5316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5316_low_29 |
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Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 33817168 - 33817410
Alignment:
| Q |
1 |
tagaatggagtttgttgattgaagttttaacaaagtttggttttaatgcaacttcccgtaattggataaaggccatactggattcagctcacttatctat |
100 |
Q |
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| T |
33817168 |
tagaatggagttttttgattgaagttttaacaaagtttggttttagtacaacttcccgtaattggataatggccacactggattcagctcacttatctat |
33817267 |
T |
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| Q |
101 |
ctctatcaatggtacccaacatggttacttttaagtgtactttaagtgtactcgcttttctatcttgcagaagaagtgttgagcaggggcatttctaaac |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
33817268 |
ctctatcaatggtacccaacatggttacttttaagtgtactttaagtgtactcgcttttctatcttgcagaagaagtgttgagcacgggcatttctaaac |
33817367 |
T |
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| Q |
201 |
cggtggataatggtgatttagagttgatgtcaagcactagaag |
243 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
33817368 |
tggtggataatggtgatttagagttgatgtcaagcactagaag |
33817410 |
T |
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